Mus caroli (Ryukyu mouse): 110312447
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Entry
110312447 CDS
T05910
Symbol
Chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110312447 (Chd1)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110312447 (Chd1)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110312447 (Chd1)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
110312447 (Chd1)
SLIK complex
110312447 (Chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
110312447
NCBI-ProteinID:
XP_021041702
Ensembl:
MGP_CAROLIEiJ_G0021099
UniProt:
A0A6P5R2Z3
LinkDB
All DBs
Position
17:11307191..11374230
Genome browser
AA seq
1711 aa
AA seq
DB search
MNGHSDEESVRNGSGESSQSDDDCGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGS
QSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLRKQPQQAQQQRPASSNSG
SEEDSSSTEDSDDSSSGAKRKKHNDEDWQMSGSGSPSQSGSDSDSEEERDKSSCDGTESD
YEPKNKVRSRKPQNRSKSKNGKKILGQKKRQIDSSEDEDDEDYDNDKRSSRRQATVNVSY
KEDEEMKTDSDDLLEVCGEDVPQTEDEEFETIERVMDCRVGRKGATGATTTIYAVEADGD
PNAGFERNKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRW
LKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGLPDYYCKWQGLPYSECS
WEDGALISKKFQTCIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPCYIGGHEGLELR
DYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAF
LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ
KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH
LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVA
NFSNMDEDDIELEPERNSKNWEEIIPEEQRRRLEEEERQKELEEIYMLPRMRNCAKQISF
NGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAIARDAELVDKSETDLRRLGELVHNGCVKALKDSSSGTERAGGRLGKVKGPTF
RISGVQVNAKLVIAHEDELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLL
IGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKREA
QRLGGAGGSKRRKTRAKKSKAVKSIRVKEEIKSDSSPLPSEKSDEDDDKLNDSKPESKDR
SKKSVVSDAPVHITAGGEPVPIAEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSE
REQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHA
IKKRQESQQNSDQNSNVATTHVIRNPDMERLKENTNHDDSSRDSYSSDRHLSQYHDHHKE
RHQGDSYKKSDSRKRPYSSFSNGKDHREWDHYRQDSRYYSDREKHRKLDDHRSREHRPSL
EGGLKDRCHSDHRSHSDHRMHSDHRSSSEHTHHKSSRDYRYLSDWQLDHRAASSGPRSPL
DQRSPYGSRSPFEHSAEHRSTPEHTWSSRKT
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagtgatgaagaaagtgttagaaatggcagcggagaatcaagtcagtca
gatgatgattgtgggtcagcatcaggctctggatctggctcgagttctggcagcagcagt
gacggaagcagcagtcaatccgggagcagcgactctgattctggctctgactcaggaagt
caatcagagtctgaatcagacacatcccgagagaacaaagttcaagcaaaaccaccaaaa
gtcgatggagccgagttttggaaatctagccccagtattctggctgttcagagatctgcc
atgcttaggaagcagccacagcaggcccagcagcagcgcccagcttcatctaatagtgga
tccgaagaggactcctccagcactgaagactcagacgactcgtccagcggtgccaagagg
aagaagcacaatgatgaagactggcagatgtctgggtccggatctccatctcagtctggt
tcagactcagattctgaagaagagcgagataaaagcagctgcgacggcacagagtctgac
tacgagccgaaaaacaaagtcagaagccgaaagcctcagaatagatctaagtcaaaaaat
gggaaaaaaattcttggacaaaaaaagagacagattgattcatctgaggatgaagatgat
gaagattatgataatgataaacgaagctctcgccgccaagccaccgtcaatgtgagctac
aaggaggatgaagaaatgaaaaccgactctgatgacctgctggaggtctgcggagaggac
gtccctcagactgaggacgaggagtttgagacaatagagagggttatggattgcagagtt
gggcggaaaggagctactggtgctactacaaccatttatgctgtcgaagcagatggtgac
ccaaatgcaggatttgaaagaaacaaagagccaggagacatacagtatttaattaagtgg
aaaggatggtctcacatccacaacacatgggagacagaagagaccctgaagcagcagaac
gttagagggatgaaaaaattggataattataagaaaaaagatcaagagacaaaacgatgg
ctgaaaaatgcttctccagaagatgtggaatattataattgccagcaagaacttacagat
gatctacacaaacagtatcagatagtggagcgcataattgctcattccaatcaaaaatca
gcagctggtcttcctgattattattgcaaatggcaggggcttccatactcagagtgcagc
tgggaggatggagctctcatttccaaaaagtttcagacatgcatcgatgaatattttagc
aggaatcagtcaaaaacgacaccttttaaagattgcaaagtattgaaacaaagaccaaga
tttgtagctctgaagaaacagccatgctatatcggaggacatgagggcttagaactgaga
gactatcagctgaatggtttaaactggctcgctcactcttggtgcaaaggaaatagttgc
atacttgctgatgaaatgggccttgggaaaacaatacagacgatctcatttttgaactat
ttgttccatgaacatcagttatacgggccttttctactagttgtcccgctctccacactg
acttcctggcaaagggagattcagacgtgggcgtctcagatgaatgctgtggtttactta
ggcgacattaacagcagaaacatgataagaactcatgaatggatgcatccccagaccaaa
cggttaaaatttaatatacttttaacaacgtatgaaattttattgaaggataaggcattc
cttggtggtctgaattgggcatttataggtgttgatgaagcacatcgattaaaaaatgat
gattcccttctgtataaaactttaattgactttaaatctaatcatcgcctcctgatcact
ggaacccctctacagaactccctgaaagagctctggtcgttgctgcacttcattatgccg
gagaagttttcttcatgggaagattttgaagaagaacatggcaaaggcagagaatatggt
tatgcaagcctccacaaggagcttgagccatttctgttacgcagagttaagaaagatgtg
gaaaaatctcttcctgccaaggtggagcagattttaagaatggaaatgagtgctttacag
aagcaatattacaagtggattttaactaggaattacaaagccctcagcaaaggttccaag
ggcagtacctcaggctttttgaacattatgatggagctaaagaaatgttgtaaccattgc
tacctcattaaaccaccagataataatgaattctataataaacaggaggccttacaacac
ttaatccgtagtagcggaaaactcattcttctcgacaagctgttgattcgcctaagagaa
agaggcaaccgagtgctcattttctctcagatggtgcggatgttagacatactggcagag
tatttgaagtaccgccagttcccctttcaaagattagatggatcaataaaaggggagctg
aggaaacaggctctggatcattttaatgctgagggctcagaggatttctgctttttgctt
tctacccgagctgggggtttaggcattaacctagcctctgctgacactgttgttatattt
gattctgattggaatccacaaaatgatcttcaggcgcaggcaagagctcaccgaattgga
cagaagaaacaggtgaatatatatcgcttggttacaaagggatcagttgaagaagatatt
cttgaaagggccaaaaagaaaatggttttggatcatcttgttattcaaagaatggatacc
actgggaagacagtgttacacacaggctcagctccatcaagttccacccccttcaataaa
gaggagttatccgccattttaaaattcggtgctgaggagctctttaaggagcctgaagga
gaggaacaggagccacaggaaatggatatcgatgaaatcctgaagagagccgagactcac
gagaacgagccaggcccactgaccgtgggggatgagctgctttctcagtttaaggttgcc
aatttttcaaatatggatgaagatgacattgaattggaacctgaaagaaattcaaagaac
tgggaggagatcattccagaagagcaaagacggcggctagaagaggaggagaggcagaag
gagctggaggaaatttacatgctcccgagaatgagaaactgtgcaaagcagataagtttc
aatggaagtgaagggaggcggagtagaagcaggagatactcaggatctgatagtgattca
atctcggaaaggaaacggccgaagaaacgcggccgaccacgcactatccctcgggagaac
attaaaggatttagtgatgcggagattcggcggtttatcaagagctataagaaatttggt
ggccctctggagaggttagatgcaattgctcgagatgctgaattggttgataagtcagaa
acagatctcagaagactaggagaactggtgcataatggttgtgttaaagctttaaaagac
agttcttcaggaacagagcgagcaggtggcagacttggaaaagtgaaggggccaacattc
cgcatctctggagtccaagtgaatgccaagctggtcattgcccatgaggatgagctgatc
cctctgcataagtccatcccttcggacccggaggagaggaagcagtatacaatcccctgc
catacaaaggctgctcactttgatatagactggggcaaagaagatgattctaatttgtta
attggtatctatgagtatggctatggaagctgggaaatgattaaaatggatccagacctc
agtttaacacacaagattcttccagatgatcctgataaaaaaccacaagcaaaacagtta
cagacccgtgcagactacctcatcaaactacttagcagagacctcgcaaaaagagaggct
cagagacttggtggtgcaggaggttcaaagcggagaaaaacgagagctaaaaagagtaag
gcagtgaaatccatcagagtgaaagaggagataaagagcgactcgtcgcccctgccttca
gagaagtctgacgaggatgatgataaactgaatgactccaagcctgaaagtaaagaccga
tccaaaaagtctgtggtgtccgatgctcccgtccatatcactgcaggtggagagccagtt
cccatagctgaagagtctgaagagctggatcagaagacattcagtatttgtaaagaaaga
atgagaccggtgaaagcagctttgaaacaacttgacaggcctgagaaaggcctttcagaa
agagagcagctggaacacactagacagtgcttaatcaagatcggagaccatatcactgaa
tgcttgaaggaatattccaatcctgaacaaattaagcagtggaggaaaaacctgtggatt
tttgtatctaagtttactgagtttgatgcaaggaaattacataaattatataagcatgct
attaaaaaacgacaagaatctcagcaaaacagtgaccagaatagcaatgttgctaccact
catgtgattaggaatccagatatggaaaggttaaaagagaatacaaatcatgatgacagt
agcagggacagctattcttctgacagacacttatctcagtaccatgatcatcacaaggag
cgccatcagggagattcttataaaaagagtgactctcggaagagaccctactcgtcattt
agcaatggcaaagaccaccgcgagtgggaccactacaggcaggacagcaggtactatagt
gaccgagagaaacacagaaaactggatgaccacaggagtcgagagcacaggccaagtttg
gaaggaggcttaaaggacaggtgtcactctgaccaccgatctcactcggaccatcgaatg
cactcagaccatcgctcaagctccgagcacacacatcataaatcctccagggattatcgg
tatctctcagattggcagttggaccaccgagctgccagcagtggccctaggtcaccttta
gatcagaggtctccatatggctccaggtccccatttgaacattcagctgaacacagaagt
acgcctgaacacacctggagtagtcggaagacataa
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integrated database retrieval system
