Mus caroli (Ryukyu mouse): 110312455
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Entry
110312455 CDS
T05910
Symbol
Ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
mcal03037
]
110312455 (Ift140)
Cilium and associated proteins [BR:
mcal03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
110312455 (Ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_Prp19
Beta-prop_HPS5
WDR55
Beta-prop_WDR90_POC16_2nd
TPR_IFT80_172
TPR_GEMI5
TPR_COPA_B
Clathrin
tRNA_int_end_N2
Beta-prop_WDR75_1st
RNase_HII
Exo84_C
TPR_12
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
110312455
NCBI-ProteinID:
XP_021041711
Ensembl:
MGP_CAROLIEiJ_G0021218
UniProt:
A0A6P5R907
LinkDB
All DBs
Position
17:20837464..20923489
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AA seq
1464 aa
AA seq
DB search
MALYFDHRIKAPDTPSSPSHITWHPTHPFLAVASISPSSGGNVDIYLEQGEPVPDTHIER
SFQATSLCWHPTRLILAIGWETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVS
GDKLGVLLLWRLDQRGRVQGTPLLKHEYGKALTHCIFRLPPPGEDLVQLAKAAVSGDEKA
LDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQVASTDSSIQTLFYIE
RREALVVVTENLLLSLYVVTPEGEAEEVMKVKLSGKTGCRADITLIEGSLLVTAIGEPVL
RFWDLERGENYILSLQEKFGFEKGESMNCVCFCKAKGLLAAGTHKGRVAMWKKVPSFPNG
RGAEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSTESVSILSEQAMSSHFHQQVAAV
QISPSLVNVSFLSTGGTHSLRTDMHISGVFATKDAVAVWNGKQVAIFEPSGSTLRNAGTF
LCETSVLAMHEESIYTVEPNRLQVRTWQGTVKQLLLFSETEGSPCLLDVCGTFLVAGTDL
AHFKSFDLSRREAKVHCSCKNLAQLVPDVGSITSLRCNANGNKISILLSKVDNSPDSKIY
IYDVEMDTVNVFNFTTGQIGQIQILPFNEPPTNETRSFMDESLAGYTPVNHFWDQSEPRL
FVCEALQEAPGAQPQAVDKQPHVEEGTCHKEAVLILSFFASEEHGFLLHDSFPRPSTYQS
LLGMEVPHYYFTKKPGEADKEDRMDSGYYHIPQMVAKRPLRDFVGLEDCDKSTRDAMLNF
SFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREA
EREPELEARVAMLAIQLGMLEEAEQLYKKCKRYDLLNKFYQASDQWQKAVEVAELHDRVH
LRTTYYNYAKHLEASADCGQALSYYEKSDTHRFEVPRMLSEDLQSLELYINRTKDKTLWR
WWAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQ
YESQDEVKQAVHFYTRAQAFNNAIRLCKENALDDQLMNLALLSSPEDMIEAARYYEEKGE
QMDRAVMLYHKAGHFSKALELAFSTQQFAALQLIAEDLDERSDPALLARCSDFCIEHRQF
EKAVELLLAAKKYHEALQLCLEQNMTITEDMAEKMTVSKDSKELSEESRRELLEQIANCC
MRQGNYHLATKKYTQAGDKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDW
RKEPEIMKSIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKA
KSPLDQETKLAQLQSKMTLVKRFIQARRTYTEDPKESIRQCELLLEEPDLDSTIRVGDVY
GFLVEHHVQMEEYQMAYKYLEEMRKRLPSANMSYYVDQRTVDTVHQGLGLLPPSRIMPER
VRHNSMEDHKEVYEEVIEEVDNDP
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtattttgaccaccgaatcaaagctccagacacacccagctctccctcccac
atcacctggcaccccacccacccattcctggcagtcgcatctataagcccatcttctgga
ggcaacgtagacatctaccttgagcaaggtgagcccgtgcctgacacccacattgagagg
tctttccaggccacttcactgtgctggcacccaacaaggcttatcctggctattggctgg
gaaactggagaagtgataatgtttaataagcaggacaaggagcagcacacagtgcccctg
ccacatacgactgacattgccatcctcagctggagcaccagtgggagctgtctggtatct
ggagataagcttggggtcctgctcttgtggagattggaccagcgaggccgagtacaggga
acaccactcctgaaacacgaatatgggaaagcactgacccattgcatcttccggctcccc
cctcctggggaggatctggttcagttggcaaaggcagcagtaagcggggatgagaaagcc
ctggacatgtttaactggagaaaaagcagctttggaagtttcctgaaaacgggatctcag
gaggggctgtctttctttgtcagtctcatggatggcacagtgcactatgtggatgaaaag
ggcaagactgcccaggtggcatccacagacagctccatccagaccctgttctacattgag
aggagagaggcactggttgtggtcacagagaaccttctcctgtctctgtatgtggtgact
cctgagggagaagctgaagaagtcatgaaggtaaagttgagtgggaagacaggctgccgg
gcagatatcactttgatagagggcagccttctcgtgacagctattggggagcctgtgctc
aggttctgggacttagaacggggagagaattacatactgagtctacaggagaagtttggc
tttgaaaagggagagagtatgaactgtgtgtgtttctgtaaagccaaaggtctcctagca
gcgggtacccataaaggacgagtagctatgtggaaaaaagtgccaagctttccaaatggc
cgtggggcggagggcaaggacatgtgggcccttcagacccctactgagcttgaagggaac
atcacacagataaagtggggctccaggaagaaccttctggcagtgagcagcaccgagtct
gtgtccatcctcagtgagcaagccatgtcgtcacacttccaccagcaagtagctgccgtg
cagatctccccgagcctagtcaacgtgtctttcctgtccacggggggcacacacagcctg
cgcaccgacatgcacatcagtggagtgtttgccaccaaggatgctgtggctgtctggaat
ggaaagcaggtggcgatctttgaaccctcaggatccaccttaaggaatgcagggacattc
ctgtgtgaaacatcagtgctagccatgcatgaggaaagcatttacaccgtggagccaaac
cgactccaagtccggacctggcagggaactgtcaaacaacttctgctattctctgagacc
gaggggagcccctgcttgctggatgtctgtgggactttcctggttgcagggacagattta
gctcatttcaaaagttttgatctttccagaagggaagcaaaagtgcactgcagctgcaag
aacctggcccagctggtccctgatgtggggagcatcacttctctgagatgcaatgcaaat
gggaacaagatcagcatcctcctcagcaaggtcgacaacagccctgattccaaaatctac
atctatgatgttgaaatggacacagtgaatgtcttcaacttcacgactggacagattgga
cagatacagattctgccctttaatgagccgccgactaatgagacacgttcctttatggac
gagagcctagcaggttacacgccggtgaaccatttctgggatcagagtgagcccaggctc
tttgtgtgcgaggccttgcaggaggcccctggagcccagccacaggctgtagacaagcag
ccccatgtagaggagggcacatgccacaaggaagccgtgttgattctctccttctttgct
tctgaagaacatggctttctgctccatgacagcttcccccggccttcaacctaccagagc
cttctgggcatggaagtgcctcactattacttcacaaaaaagcctggagaagcagacaaa
gaagacaggatggattctgggtactaccacatccctcagatggtagccaagaggccccta
cgagactttgtggggctggaggactgtgacaagtctactcgggatgccatgctcaacttc
agcttctttgtcaccattggagacatggatgaagctttcaaatctatcaaactcatcaag
agtgaggctgtctgggagaacatggcacgtatgtgtgtgaagactcaacggctggatgtt
gccaaggtgtgcctagggaacatgggccatgcccgtggggcccgagcactgcgggaagct
gagcgggagccagaactggaagccagagtggccatgctggccatacagctgggcatgctg
gaggaggcagaacaactgtataagaagtgcaaacgctacgaccttctgaacaagttctac
caggcctcagaccagtggcagaaagctgtggaggtggcggagctccacgaccgtgtccac
ctgcgcaccacctactacaactacgccaagcacctggaggccagcgctgactgcggccag
gccctcagttattatgagaagtcagacacccaccgttttgaggttcctaggatgctctcg
gaagacctgcagtccctggagctctacatcaataggacgaaggacaagaccctctggaga
tggtgggcccagtatcttgagagccaggcagagatggacactgcactgcgctactacgag
ctggcgcaggactacttctccctggtccgcattcactgcttccagggcaacattcagaag
gctgctgaaatagccaacgagactggagactgggctgcatcctaccaccttgcccggcag
tacgagagccaggatgaggtaaaacaggcagtgcacttctacactcgggcacaggctttc
aacaacgccatccgcctgtgcaaggagaatgccttagatgaccaactcatgaacttggcc
ctgttgagttccccagaggacatgattgaggcagcccggtattatgaggagaagggcgag
cagatggacagggctgtcatgctgtaccacaaggctggacacttttccaaggccctggag
ctggccttcagcacccagcagtttgcagcactacagctcatagccgaggacctggatgag
aggtcagaccctgctcttctggcccgctgctcagacttctgcattgagcacagacagttt
gaaaaggctgtggagcttctcctggctgccaagaagtaccatgaggctctgcagctgtgc
ctagagcagaacatgaccatcactgaggacatggcagagaagatgactgtgtccaaggac
tcaaaggagctgtctgaggagtcccggcgggagcttctggagcagatcgccaactgctgt
atgcgccagggcaactatcacctggccaccaagaagtacacacaggctggggacaagctg
aaggccatgagagcactgctcaaatctggagacacagagaaaattgtgttctttgcgggt
gtctcaagacagaaggaaatctacatcatggctgccaattacctgcagtccctggactgg
cggaaggagccggagatcatgaagagtatcattagcttctacaccaaagggcgggccttg
gacctcctggctggcttctatgatgcctgtgcccaggtggagattgacgaataccagaac
tatgacaaggcccatggagcactgactgaggcctataagtgcctgtccaaagccaaggcc
aagagccccctggaccaggagaccaagctagcccagctacagagcaagatgacgctggtg
aagaggttcatccaggcccgaaggacatacacagaggaccccaaagagtccatcaggcag
tgtgagctgctcctagaagagccagacctggacagcaccatccgtgtcggagacgtctat
ggcttcctggtggaacaccatgtacagatggaggaataccagatggcctataagtatctt
gaggagatgaggaaaagacttccttcagccaacatgtcatactatgtggaccagcgcact
gtggacactgtgcaccagggcctgggcctcctccctccatctcgtatcatgcccgagcgg
gtccgccacaatagcatggaggaccataaggaggtgtacgaggaggtgatagaagaggtg
gacaatgacccctga
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integrated database retrieval system
