Mus caroli (Ryukyu mouse): 110312630
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Entry
110312630 CDS
T05910
Symbol
Prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04120
Ubiquitin mediated proteolysis
mcal04137
Mitophagy - animal
mcal04141
Protein processing in endoplasmic reticulum
mcal05012
Parkinson disease
mcal05014
Amyotrophic lateral sclerosis
mcal05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110312630 (Prkn)
04120 Ubiquitin mediated proteolysis
110312630 (Prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
110312630 (Prkn)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
110312630 (Prkn)
05014 Amyotrophic lateral sclerosis
110312630 (Prkn)
05022 Pathways of neurodegeneration - multiple diseases
110312630 (Prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcal04131
]
110312630 (Prkn)
04121 Ubiquitin system [BR:
mcal04121
]
110312630 (Prkn)
03029 Mitochondrial biogenesis [BR:
mcal03029
]
110312630 (Prkn)
Enzymes [BR:
mcal01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
110312630 (Prkn)
Membrane trafficking [BR:
mcal04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
110312630 (Prkn)
Aggrephagy
Other aggrephagy associated proteins
110312630 (Prkn)
Xenophagy
Other xenophagy associated proteins
110312630 (Prkn)
Ubiquitin system [BR:
mcal04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
110312630 (Prkn)
Mitochondrial biogenesis [BR:
mcal03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
110312630 (Prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
110312630
NCBI-ProteinID:
XP_021042048
Ensembl:
MGP_CAROLIEiJ_G0021055
UniProt:
A0A6P5R9T0
LinkDB
All DBs
Position
17:complement(4885905..6068022)
Genome browser
AA seq
465 aa
AA seq
DB search
MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCD
LEQQSIVHIVQRPRRKNHETNASGGDKPQSTSEGSVWEPRSLTRVDLSSHALPADSVGLA
VILDTDSKRDSEAARGPAVKPTYNSFFVYCKGPCHKVQPGKLRVQCGTCKQATLTLAQGP
SCWDDVLIPNRMSGECQSPDCPGTRAEFFFKCGAHPTSDKDTSVALNLITSNRRSIPCIA
CTDVRSPVLVFQCNHRHVICLDCFHLYCVTRLNDRQFVHDAQLGYSLPCVAGCPNSLIKE
LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEQGQRKVTCEGGNGLGC
GFVFCRDCKEAYHEGDCDSLFEPSGATSQAYRVDKRAAEQARWEEASKETIKKTTKPCPR
CNVPIEKNGGCMHMKCPQPQCKLEWCWNCGCEWNRACMGDHWFDV
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactccagctatggcttcccagtggaggtcgattctgac
accagcatcttgcagctcaaggaagtggttgctaagcgacagggggttccagctgaccag
ctgcgtgtgatttttgccgggaaggagcttccgaatcacctgacggttcagaactgtgac
ctggaacaacagagtattgtacacatagtgcagagaccacggaggaaaaatcatgaaaca
aatgcatctggaggggacaaaccccagagcacctcagagggctccgtatgggagcccagg
agcttgacacgagtggacttgagcagccatgccctgccggcggactctgtggggctagcg
gtcattctggacacagacagtaagagggactcagaagcagccagaggtccagcagttaaa
cccacctacaacagcttttttgtctactgcaaaggcccctgccacaaggtccagcctgga
aagctccgagttcaatgtggcacctgcaaacaagcaaccctcaccttggcccagggccca
tcttgctgggacgatgtcttaattccaaaccggatgagtggtgagtgccagtctccagac
tgccctggaaccagagctgaatttttctttaaatgtggagcacacccaacctcagacaag
gacacgtcagtagctttgaacctgatcaccagcaacaggcgcagcatcccttgcatagcg
tgcacagatgtcaggagcccggtcttggtcttccagtgtaaccaccgccacgtgatctgt
ttggactgtttccacttgtattgtgtcacaagactcaacgatcggcagtttgtccacgat
gctcaacttggctactccctgccatgtgtggctggctgtcccaactccctgattaaagag
ctccatcacttcaggatccttggagaagagcagtacaataggtaccagcagtatggtgct
gaggaatgcgtgctgcaaatgggaggtgtgctgtgcccccgtcctggctgtggagctgga
ctgctacctgaacagggtcagaggaaagtcacctgcgaagggggcaacggcctgggctgc
gggtttgttttctgccgggactgtaaggaagcataccatgaaggggattgcgactcactg
ttcgaaccctcaggagccacttctcaggcctacagggtggacaaaagagccgctgagcaa
gctcgctgggaggaggcctccaaggaaaccatcaagaagaccaccaagccttgtcctcgc
tgcaacgtgccaattgaaaaaaacggaggatgtatgcacatgaagtgtcctcagccccag
tgcaagctggagtggtgctggaactgcggctgtgagtggaaccgagcctgcatgggggat
cactggtttgacgtgtag
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