Mycoplasma capricolum subsp. capripneumoniae ILRI181: MCCPILRI181_00831
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Entry
MCCPILRI181_00831 CDS
T03704
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcar
Mycoplasma capricolum subsp. capripneumoniae ILRI181
Pathway
mcar03030
DNA replication
mcar03410
Base excision repair
mcar03420
Nucleotide excision repair
mcar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCCPILRI181_00831 (ligA)
03410 Base excision repair
MCCPILRI181_00831 (ligA)
03420 Nucleotide excision repair
MCCPILRI181_00831 (ligA)
03430 Mismatch repair
MCCPILRI181_00831 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcar03032
]
MCCPILRI181_00831 (ligA)
03400 DNA repair and recombination proteins [BR:
mcar03400
]
MCCPILRI181_00831 (ligA)
Enzymes [BR:
mcar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCCPILRI181_00831 (ligA)
DNA replication proteins [BR:
mcar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCCPILRI181_00831 (ligA)
DNA repair and recombination proteins [BR:
mcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCCPILRI181_00831 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCCPILRI181_00831 (ligA)
MMR (mismatch excision repair)
DNA ligase
MCCPILRI181_00831 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCCPILRI181_00831 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
5_3_exonuc
PTSIIA_gutA
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CEA11182
LinkDB
All DBs
Position
1:complement(834083..836089)
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AA seq
668 aa
AA seq
DB search
MSKEQILLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP
SQKVGGTVSEKFLKITHKTPMLSLGNVFSFDEFLEFNTQVSKVSNNLNNEYVAELKIDGL
SISLVYENGVLVSAATRGNGVIGEDVTTNVRTIKSIPLKISKKERVEVRGEIYLSKAEFE
KINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSPNLNQYESIL
KLNQLGFKTNKETMLCKNLDQIKAYIQKYTNLKNDLDYQIDGIVFKINDKNLQNSLGFTS
KIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAATLNNAEYI
KSKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQPILYCPNCHSLLEKNENEVDQ
FCINSSCSMKILRSLQHFSSREAINIVSLGDRSLEILFNLKIIQNISDIYKLEEYKDQIL
AIENFGLKSYLNLIDSINMSKNNSLEKVLFGLGIRHIGSKTAKILARKYQNIDNLMKASY
DELIQINSIGESLALSIIDWFKIEDNLKLINELKSFNINFNYLGAKINSDSIIANKTFVI
TGTLTRPREEFKTLIENNAGKISGSISKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFF
DLLKSEKG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagaacaaattctattaagaattaatcaattaaaagaacagttaaacttatga
tcaaaacaatattatgttgatgataatccaagtgttgatgacactgaatatgatttagct
ttaaaagaactaattagtttagaaaatttatatcctgaatttattactagtgattcacct
agtcaaaaagttggtggaacagttagtgaaaagtttttaaaaataactcataaaacacca
atgctaagtttaggtaatgtttttagttttgatgaatttttagaatttaatactcaagta
agtaaagtttcaaataatttaaataatgaatatgtagctgaattaaaaattgatggttta
tcaatttcattagtttatgaaaatggagttttagtatcagctgctactagaggtaatgga
gtaattggtgaagatgttactactaatgtaagaactattaaatctattcctttaaaaatt
agtaaaaaagaacgtgttgaagttagaggagaaatttatttatctaaagctgaatttgaa
aaaatcaatcaaaaaagattattaaataatgaagatttatttataaatccaagaaatgca
gctgctggtactttaagacagttagattcaaaaatagttgcaagtagaaatcttgatgct
tttttatattattacattagtgatgattcacctaatcttaatcaatatgaatctatttta
aaactaaatcagttaggttttaaaactaataaagaaacaatgttatgcaaaaatttagat
caaattaaagcatatatacaaaaatatactaatttaaaaaatgatttagattatcaaatt
gatggaattgtatttaaaattaatgataaaaatttacaaaatagtttaggattcactagt
aagattccaaagtgagcaattgcttataagtttccagctgaaatcaagcaaactaaacta
ttagatatatttgctacagttggaagaactggaaaaattacttataatgccaaacttgag
cctgtttttttaatgggagctacaattagtgctgctactttaaataatgcagaatatatt
aagtcaaaagatttaagaattaatagtatagttaaaataaaaaaagctggagatgttatt
ccagaagttattgaagctattaaagatgaaactttttataacttagaagtttttcaacct
atattatattgtccaaattgtcattctttattagaaaaaaatgaaaatgaagttgatcag
ttttgtataaattcttcttgttctatgaaaatattaagatcattacaacattttagtagt
agagaagctataaatattgttagtttaggagatagaagtttagagattttatttaattta
aaaattattcaaaatatttcagatatttataagttagaagaatataaagatcaaatttta
gcaattgaaaattttggtttaaaaagctatttaaatttaattgattcaattaatatgtct
aaaaataattctttagaaaaagttttatttggtttaggaattagacatattggaagtaaa
actgcaaaaattttagctagaaaatatcaaaatatagataacttaatgaaagctagttat
gatgaattaattcaaataaattcaattggagaatcattagctttatctattattgattga
tttaaaatagaagataatttaaaactaattaatgagttaaaatcatttaacattaatttt
aattatttaggagcaaaaattaattctgattcaataattgctaataaaacattcgtaatc
actggaactttaacaagaccaagagaagaatttaaaacattaattgaaaataatgcaggt
aagataagtggttcaatttctaaacaaactgactatttattagctggtaataatgtgggt
tctaaactagaaaaagcaaaaaaattaggtgttaaaattatagatgaacaacagtttttt
gatttattaaaatcagagaaaggataa
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