Mycoplasmopsis caviae: NPA07_02280
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Entry
NPA07_02280 CDS
T08517
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcav
Mycoplasmopsis caviae
Pathway
mcav03030
DNA replication
mcav03410
Base excision repair
mcav03420
Nucleotide excision repair
mcav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NPA07_02280 (ligA)
03410 Base excision repair
NPA07_02280 (ligA)
03420 Nucleotide excision repair
NPA07_02280 (ligA)
03430 Mismatch repair
NPA07_02280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcav03032
]
NPA07_02280 (ligA)
03400 DNA repair and recombination proteins [BR:
mcav03400
]
NPA07_02280 (ligA)
Enzymes [BR:
mcav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NPA07_02280 (ligA)
DNA replication proteins [BR:
mcav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NPA07_02280 (ligA)
DNA repair and recombination proteins [BR:
mcav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NPA07_02280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NPA07_02280 (ligA)
MMR (mismatch excision repair)
DNA ligase
NPA07_02280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NPA07_02280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HNOB
Motif
Other DBs
NCBI-ProteinID:
UUD35678
LinkDB
All DBs
Position
478492..480474
Genome browser
AA seq
660 aa
AA seq
DB search
MNKSEIKNKIVELRDKLNKWNKEYYQDNNPSVSDLEYDKTLLELEELEKKYPQYIYAGSP
SLILGSFADNKFKKVVHKKPMLSLSKAYEYAEIEKFVSNIEKIVPIENINFSVEPKIDGL
SISLHYKNGFLSQALTRGDGQEGEDVSENIYQIKSIPKFINYDAELEVRGEIFLPKAQFN
RLNSQLISAGEKPFANPRNAASGTLRQLDATIVKQRNLSAFLYELVDPHSHNIKTQEEAI
NFLISLGIPTNPLFKLVEVEELEEAISSFAEIKDKLDYDADGLVIKLNDLRYWDKMGRTA
KFPKHSIAFKYEVETATSIIKDIKTTVGRTGKITYIANLEPVELNQTIVRAATLHNFNFI
KDLNINIGDQVQIVKAGEIIPKVLSLVKKRSGDTFEKVQNCPCCNSKLIEIENNVDQFCI
NNQCAEMIINSIYHFASRKSLNIVGLGLSTVKDLYKNNLVKNIEDIFNLHLHKEELLKLE
RYADQKVNNLLNNIEKAKESTFSKILFALGIKHIGERAAKLISKQYSNFSQLIYEKDTLE
KISTINNIGPKIIESLKEYLNKQENIDLLLKFDNLFKYQKNTQINSEKLTNLSFVITGKL
NNARDYYIDLIETNGGKVSSSVSAKTSYLLAGDDAGSKLDKAKKLNIKIINEDEFNQLLK
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagcgagatcaaaaataaaattgttgagttaagagataaattaaataagtga
aataaagaatattatcaagataataatccctctgtcagtgatcttgaatatgataagaca
ctgctcgaattagaagaattagaaaaaaaatatccacaatatatttatgctggtagcccg
agtttaatattaggttcttttgcggacaataaatttaaaaaggtggttcacaaaaaacct
atgctttcactttcaaaagcatatgagtatgccgagattgaaaagtttgtatctaacatt
gaaaagattgtaccaattgaaaatattaatttttcagtggagccaaaaattgatggtctt
tcgatttcactacattataaaaatggtttcttaagccaagcattaactagaggcgatggg
caagaaggcgaggatgtaagtgaaaatatttatcaaattaaatcgattccaaaatttatt
aactatgatgctgaattagaagtaagaggcgaaatatttttaccaaaagctcagtttaat
aggctaaatagtcaattaataagtgctggagaaaaaccttttgctaatccaagaaatgca
gccagtggtacattaagacaactcgatgcaacaattgttaagcaaagaaatctttcagct
tttctttatgagttagttgatccacacagtcataatatcaagacacaagaagaagcaata
aattttttaattagtttaggcattcctacaaacccgctttttaaattagttgaggttgaa
gaattagaagaagcgattagttcgtttgcagaaataaaagataaacttgattatgatgca
gacggtttagttattaaattaaatgatttaagatactgagataaaatgggtagaacagct
aaatttcctaaacactcaatcgcttttaaatatgaagttgaaacagccacaagtattatc
aaagatataaaaacaacagttggaagaactgggaaaataacatatatagctaatttggag
ccggttgaattaaatcaaacaattgtaagagcagccacattacacaattttaattttatt
aaggacttaaacattaatattggcgaccaggttcaaattgttaaagcaggcgaaattatt
ccaaaagttttatcattggtaaaaaaacgctcaggtgacactttcgagaaagttcaaaat
tgtccttgttgcaatagtaagttaattgaaattgagaataatgttgaccaattttgtatt
aacaatcaatgtgcagaaatgataattaattcaatttatcactttgcttcaagaaagtca
cttaatattgtaggtttaggactttcaacagttaaggacttgtataaaaataatttagtt
aaaaatattgaagatatttttaatctacatttacataaggaagaactacttaaactagaa
cgctatgccgatcaaaaggttaataatttattgaacaacattgaaaaagcaaaagagtca
acttttagtaaaatcctatttgcattaggcattaaacacatcggtgagagagcagcaaaa
ttaatatctaagcagtatagcaatttttcccaattaatctatgaaaaagacactttggaa
aaaatatcaactataaataatataggtcctaaaataatagaaagtctaaaggaatattta
aataaacaagaaaacatcgatttattacttaaatttgataacttgtttaaatatcagaaa
aatacacaaattaatagtgaaaagttaactaatttatctttcgttattacaggtaagcta
aacaatgcacgcgattattatatagacttaattgaaacaaatggtggcaaagtttcttca
tctgtttctgccaagacttcataccttttagcaggtgatgatgcaggaagtaaattagat
aaagcaaagaaactaaatattaaaataattaatgaagatgaatttaaccaacttttaaag
tag
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