Microbacterium caowuchunii: F6J84_06950
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Entry
F6J84_06950 CDS
T07216
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcaw
Microbacterium caowuchunii
Pathway
mcaw03030
DNA replication
mcaw03410
Base excision repair
mcaw03420
Nucleotide excision repair
mcaw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F6J84_06950 (ligA)
03410 Base excision repair
F6J84_06950 (ligA)
03420 Nucleotide excision repair
F6J84_06950 (ligA)
03430 Mismatch repair
F6J84_06950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcaw03032
]
F6J84_06950 (ligA)
03400 DNA repair and recombination proteins [BR:
mcaw03400
]
F6J84_06950 (ligA)
Enzymes [BR:
mcaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F6J84_06950 (ligA)
DNA replication proteins [BR:
mcaw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F6J84_06950 (ligA)
DNA repair and recombination proteins [BR:
mcaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F6J84_06950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F6J84_06950 (ligA)
MMR (mismatch excision repair)
DNA ligase
F6J84_06950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F6J84_06950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QEW01479
LinkDB
All DBs
Position
1462161..1464503
Genome browser
AA seq
780 aa
AA seq
DB search
MDLALTLEAARAEGQELTERILGARDAYYGADAEIVDDATYDGWMRRLEQIERAFPELQG
QDSPTQSVGAAQTSDLATIEHAERMLSLDNVFSPEELREWCVKAENSAGRRVRWLTELKI
DGLAISLRYENGVLTSAATRGDGRVGEIVTENALRLGDIPERLSGTGHPALVEVRGEVFI
PVAAFERLNALQAELRERAVAEARERWATRKAGAAEFDEEKARAAAQRRFPAFANPRNAA
SGGLRQQLDKKTGLEREAALERIGALRLYVHGIGAWPDPPVSAQSEVYALLEGWGLPVST
HNRVNDDIDGVLGFVAYYGEHRHDVEHELDGIVVKVDELSLHDELGATSRAPRWAIAYKY
PPEQVNTRLLDIVVSVGRTGRATPFAVMEPVRVAGSVVRQATLHNQDVVKAKGVLIGDTV
VLRKAGDVIPEVLGPVAELRDGTERAFVMPAECPECGTPLAPAKEGDIDLRCPNARSCPA
QVRGRVEHIGSRGALDIEALGEVTAAALTQPDVPAEPPLDTEAGLFDLTLEQIVPIEVVV
RDAETGLPKENDAGVVKKRSPFRRNPSAEEKRAGLTGPQPSEQARKLLEELEKAKTKDLW
RLLVALNIRHVGPVAARALAQWFGSLDAIRAASREELAAVEGVGGIIADAVLDWFEVDWH
RDIVERWSEAGVRWATPGHPGPGAASAGGGVLEGITVVATGSLEGYSREGAQEAIIAAGG
KAASSVSKKTDFVAAGPGAGSKLAKAEDLGVRIIDAAQFRILVEQGPAALDAPVATEPPL
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atcgacctcgccctgaccctcgaggcggcacgcgccgaggggcaggagctcaccgagcgg
atcctcggcgcccgcgacgcctactacggcgcggacgccgagatcgtcgacgacgcgacc
tacgacggatggatgcggcggctcgagcagatcgaacgcgctttccccgagctgcagggt
caggactcgccgacgcagtccgtcggggcggcgcagacgtccgatctcgcgacgatcgag
cacgccgagcggatgctcagcctcgacaacgtcttctccccggaggagctgcgcgaatgg
tgcgtgaaggcggagaactccgccggacgtcgggtgaggtggctcacggaactgaagatc
gacgggctcgcgatcagtctgcgctacgagaacggcgtcctcacctcggccgcgacccgc
ggcgacggccgggtgggggagatcgtgaccgagaacgccctgcgcctgggggacatcccc
gagcggctgagcggcacgggccatccggcgctcgtcgaggtccgcggagaggtgttcatc
ccggtcgccgccttcgagcggctgaacgcgttgcaggccgagctgcgggaacgtgccgtc
gcggaggcccgtgagcggtgggcgacccgcaaggcgggggcggcggagttcgacgaggag
aaggcgcgggccgcggcgcaacgccggttcccggcgttcgccaacccgcgcaacgccgcc
agcgggggactccggcagcagctcgacaagaagaccgggctcgagcgcgaagcggcactg
gagcggatcggagcactgcgcctgtacgtccacggcatcggtgcctggcccgatccgccg
gtctcggcccagagcgaggtctacgcgctgctcgagggatggggcctcccggtgagcacc
cacaaccgggtgaacgacgacatcgacggggtgctcgggttcgtcgcgtactacggcgag
caccggcatgacgtggagcacgagctggacggcatcgtcgtgaaggtcgacgagctctcc
ctgcacgacgaactcggcgcgacgagccgtgcaccccggtgggcgatcgcgtacaagtac
ccgccggagcaggtgaacacccgcctgctcgacatcgtcgtctcggtgggacggaccggt
cgggccacgcccttcgcggtgatggagcccgtccgggtcgcaggttccgtggtgcggcag
gccaccctgcacaaccaggacgtcgtcaaggccaagggcgtcctcatcggcgacaccgtc
gtcctgcgcaaagcgggcgacgtgatcccggaggtgctgggtccggtcgccgagctcagg
gacggcacggagcgggccttcgtcatgccggcggagtgtcccgagtgcggcacgcccctc
gccccggcgaaggagggcgacatcgatctgcgctgcccgaacgcgcggtcgtgccccgcc
caggtgcgcggtcgcgtggaacacatcggctcgcgcggtgcgctggacatcgaagcgctc
ggtgaggtgaccgccgcggccctcacccagccggatgtgcccgccgagccgcccctcgac
acggaggcgggcctgttcgatctcaccctggagcagatcgtcccgatcgaggtggtcgtg
cgggacgccgagaccgggctcccgaaggagaacgatgcgggggtcgtgaagaagcgcagc
ccgttccggcgcaatccctccgcggaggagaagcgcgccgggctgaccggcccgcagccg
tccgagcaggcgcggaaactcctggaggagctcgagaaggccaagacgaaggacctgtgg
cggctcctcgtcgcgctgaacatccggcacgtcggtcccgtcgccgctcgggcgctcgcc
cagtggttcggctcgctcgatgcgatacgtgccgcctcccgcgaggagctcgccgccgtc
gagggtgtgggcggcatcatcgcggacgcggtgctcgactggttcgaggtggattggcat
cgcgacatcgtggagcgctggagcgaggccggagtgcgatgggcgacgcccggtcatccc
ggccctggcgcggcatccgccggcggcggggtcctcgaggggatcacggtcgtcgcgacc
ggatcgctcgagggatactcgcgggagggcgcccaggaggcgatcatcgccgccgggggg
aaggcggcgtccagcgtctcgaagaagaccgacttcgtcgccgccggtccgggcgcgggc
tcaaagctcgccaaggccgaggacctcggggtacggatcatcgacgccgcccagttccgc
atcctggtcgagcagggacccgccgccctcgacgcgccggtagccaccgagccacccctt
tga
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