Mycoplasma crocodyli: MCRO_0663
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Entry
MCRO_0663 CDS
T01205
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcd
Mycoplasma crocodyli
Pathway
mcd03030
DNA replication
mcd03410
Base excision repair
mcd03420
Nucleotide excision repair
mcd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCRO_0663 (ligA)
03410 Base excision repair
MCRO_0663 (ligA)
03420 Nucleotide excision repair
MCRO_0663 (ligA)
03430 Mismatch repair
MCRO_0663 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcd03032
]
MCRO_0663 (ligA)
03400 DNA repair and recombination proteins [BR:
mcd03400
]
MCRO_0663 (ligA)
Enzymes [BR:
mcd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCRO_0663 (ligA)
DNA replication proteins [BR:
mcd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCRO_0663 (ligA)
DNA repair and recombination proteins [BR:
mcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCRO_0663 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCRO_0663 (ligA)
MMR (mismatch excision repair)
DNA ligase
MCRO_0663 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCRO_0663 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
DNA_ligase_ZBD
INTS1_INTS2-bd
DASH_Dad3
Motif
Other DBs
NCBI-ProteinID:
ADE19918
UniProt:
D5E675
LinkDB
All DBs
Position
782387..784360
Genome browser
AA seq
657 aa
AA seq
DB search
MNQKVIDKYQELIAKIKQYNNEYYNLDQPSVSDAEYDALYKELLEIEKQNPKIINQDSPS
QIIGGFASSKFSKYTHQKLMLSLDKATHFDEITKFYNDIFKVIKTDNKGFFLEPKVDGLS
ISLHYENGILQRAVTRGDGLVGEDVSENVLQIKEVKHKIAYKKPIEIRGEIYLSKENFNK
LNKKIEDQGLKSFANPRNAASGTLRQLDKNIVRERNLGIVLYELVDPLVHKITSQDQSIS
FINQLGFPTQKNNKLLYELDDILNYIEEFGEIKNNLDYDCDGLVIKYNDIEQWKLLGFTS
KFPKYAIAYKYQVEEAITRINKISISTGRTGKINYLAHVEPVELNQSIVSKATLHNYNYI
EELNLNIGDDVVIIKAGEIIPKVRELKQKKSIGVFPKLINCLSCKSKLEYIDDNLEQYCL
NKNCQEKIINSLIYFASKPCLDIKGMGDKVVKILYENGLVLEIKDFFELHNKRDKMLQLP
SFKEKKVDNLINAIETIKKAQLHKVIIALGMKNIGTRSSKLISTKINKLSDLLTYNIDEL
ENIDDIGPKSIASIKEFLSEDKNKELITFLDNYFIQVNDSSIGNKLVNLSFSITGTLLKP
RDYFVDLIEKNGGQFHKLPTSKTNYLIVGENPGSAKINKAKILGTQVITIDEFEKMI
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaaaaagttatcgataaataccaagaattaattgctaaaattaagcaatataat
aatgaatattacaacttagatcaaccaagtgtttctgatgcagaatacgatgctttgtat
aaggaattacttgaaatagaaaaacaaaaccctaaaataataaatcaagattcaccgagt
caaataattggtggatttgcatcaagcaaattcagcaaatacactcaccaaaagttaatg
ctatccttagataaggctactcattttgacgaaataacaaagttttataatgatattttt
aaagtaatcaaaactgataataaaggtttttttctagaacctaaggttgatggtttatca
atatcattacattatgaaaatggaattttacaaagagcagtaacacgtggagatgggctg
gttggagaagatgttagtgagaatgttttgcaaataaaagaagtgaaacacaaaattgca
tataaaaaaccaattgaaatccgtggtgaaatttatttatcgaaagaaaatttcaataaa
cttaataaaaaaattgaagatcaaggtttaaaaagttttgctaatccaagaaacgctgct
tcaggaacgttacgccaattagataaaaatatagttagagaaagaaacttaggaattgtt
ttgtatgaattggttgatccgcttgttcataaaataacaagccaagatcaaagcatcagt
tttattaatcagttaggctttcctactcaaaaaaataataaattactttatgaacttgat
gacatattaaactatattgaagaatttggagaaatcaaaaacaatttagattatgattgt
gatggtttagttataaaatataacgatatagagcaatggaaactacttggttttacctca
aaatttcctaaatatgccattgcgtataaatatcaagttgaagaggcaattacaagaatt
aataaaataagcatttctacaggaagaacaggaaaaataaactacctagcccatgtagaa
ccagttgaattaaatcaaagtatagtaagtaaagcaactttgcataattacaattatatt
gaagagttaaacttaaatatcggtgatgatgttgttattattaaagcgggtgaaataatt
cctaaggttagagaattaaaacaaaaaaaatcaattggtgtttttccgaaacttataaat
tgtttgtcatgtaaaagtaaactggaatacattgatgataatttagaacaatattgcctt
aacaaaaattgtcaagagaaaattattaattcacttatttattttgcttcaaaaccttgt
ttagatataaaaggaatgggtgataaagttgttaaaatattgtatgaaaatggtttggtt
ttagaaattaaagacttctttgagttgcacaataaaagagataaaatgttgcaacttcct
agctttaaagaaaagaaagttgataatcttataaacgctattgaaacaattaaaaaagca
caattacacaaggtaattatagctctaggaatgaagaatatcgggacaagatcttcaaaa
ttaatatcaacaaaaataaataaactaagtgatttattaacctataatatagatgaatta
gaaaatatagatgatattggtcctaagtcaattgcttcaataaaagaatttttaagtgaa
gataaaaataaagaattaattactttcctagataactattttatccaagtaaacgattct
tctattgggaataaattggtaaatttaagtttttcgattacaggtacattactaaaacca
agagactattttgttgatttaattgagaagaatggtggtcaatttcataagttgcctact
tctaaaacaaattacttaatcgttggtgaaaatcccggatccgcaaaaataaacaaagca
aaaattttaggaacacaagtaataactattgatgaattcgaaaaaatgatttaa
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