Microbulbifer celer: LPW13_08685
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Entry
LPW13_08685 CDS
T07789
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcel
Microbulbifer celer
Pathway
mcel03030
DNA replication
mcel03410
Base excision repair
mcel03420
Nucleotide excision repair
mcel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPW13_08685 (ligA)
03410 Base excision repair
LPW13_08685 (ligA)
03420 Nucleotide excision repair
LPW13_08685 (ligA)
03430 Mismatch repair
LPW13_08685 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcel03032
]
LPW13_08685 (ligA)
03400 DNA repair and recombination proteins [BR:
mcel03400
]
LPW13_08685 (ligA)
Enzymes [BR:
mcel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPW13_08685 (ligA)
DNA replication proteins [BR:
mcel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPW13_08685 (ligA)
DNA repair and recombination proteins [BR:
mcel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPW13_08685 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPW13_08685 (ligA)
MMR (mismatch excision repair)
DNA ligase
LPW13_08685 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPW13_08685 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
ABC_transp_aux
AphA_like
Motif
Other DBs
NCBI-ProteinID:
UFN59096
LinkDB
All DBs
Position
complement(2070399..2072435)
Genome browser
AA seq
678 aa
AA seq
DB search
MTKIRPEKAQNRAHELHEILNRANYQYYVLDEPELPDVEYDRCLRELQQLEEEYPQLITP
DSPTQRVGAEPLSAFSQVRHEMPMLSLDNAFSDEEMEDFDRRIRDRLNSKAPVEYACEPK
LDGIAVSLLYRDGVLERAATRGDGTIGEDITQNVRTIYSVPLKLLESAVPPVLEVRGEIY
MPKAGFNALNEKARAAGEKLFVNPRNAAAGSLRQLDPQITAKRPLQLCVYSVGLVEGGEL
PERHSDILEQLNRWGFRINPEMAVADNIEACIAYYNRLGEKRDQLPYDIDGIVFKVNSIP
LQRRLGFVARAPRWATAYKFPAQEEMTVLQDVEFQVGRTGAVTPVARLKPVFVGGVTVSN
ATLHNRDEIERLGVKIGDTVVIRRAGDVIPQVVSVVENRRPKDAREIQFPDHCPVCDSPV
ESTPGEAVARCSGGLICSAQRKQAIKHYASRKAMDIDGLGDKLVEQLVDEGLLHSVSGLY
RLDLDQLVSLERMGEKSAQNLLEALEKSKDTTLPKFLYALGIREVGEATARNLARYFGSL
ESLMQADEEALQQVDDVGPIVAHYVAEFFEQPHNLEEIEALQQAGVHWEDEVQEEGTQPL
QEQTWVLTGKLEVLSRSEAKDYLQRLGAKVAGSVSAKTHTVVAGPGAGSKLNKARELDIP
VLDEDEFMQMLREQGIEI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaatacgccctgaaaaagctcagaatcgcgcacatgaattgcacgaaattctc
aatcgagctaactaccaatactacgtactggacgaaccggagctgccggatgtggagtac
gaccgctgcctgcgtgagctgcaacagctcgaggaggagtatccgcagctgatcacgccg
gattctcctacccagcgggtcggcgcagaaccgttgtccgccttctcacaggtgcgtcat
gaaatgcccatgttgtcgctggataacgcattcagcgatgaggaaatggaggattttgat
cgtcgcatccgggatcgcctgaatagcaaggcgccggtggaatatgcctgcgagccgaag
ctggacgggatcgcggtcagcctgctgtaccgcgacggtgtactggagcgcgcggctacc
cgtggcgatggcaccattggggaggatattacccagaacgtacgcactatttattcggtt
ccgctcaagctccttgagagtgcggtgccgccggtacttgaggtgcgcggtgaaatctat
atgcccaaagcgggtttcaatgcgctgaatgaaaaagcgcgagcggctggtgaaaagctc
ttcgtcaacccgaggaatgccgccgccggtagtttgcgtcagctggatccccagattacc
gcgaagcgaccactgcaattgtgtgtgtacagtgtagggctggttgaaggcggcgaacta
cccgagcgtcacagtgatattctcgagcagttgaaccgctggggatttcgcatcaatcca
gaaatggcggtggcagataatattgaagcctgtattgcctattacaaccgtctgggggag
aagcgcgatcagttgccctatgacatcgacggaatcgttttcaaggtcaacagtattccc
ttgcagcgccgtctgggatttgtagcgcgcgccccacgatgggcaacggcctacaagttc
cccgcccaggaggaaatgacggtgctgcaggatgtggagttccaggtcgggcgcaccggt
gcggtgacgcccgtcgcgcgcttgaaaccagtatttgttggtggcgtcaccgtatccaat
gccaccttacacaatcgcgatgaaatcgagcgcctgggggtcaagatcggcgataccgtg
gtgattcgccgcgcgggagatgtgattccccaggtggtctcggtggtggaaaaccgccgc
ccgaaagacgcgcgggaaattcagttcccagaccactgcccggtgtgtgattcaccggtg
gaatccacaccgggagaagcagttgcgcgctgtagcggcggcctcatctgtagcgctcag
cgcaagcaggcgatcaagcattacgcgtcacgcaaggcgatggatatcgatggtctcggc
gataaactggtcgagcagctggtagacgaggggctgttgcactccgtgtccgggctctac
cgattggacctggatcagctggtatccctggagcggatgggggaaaaatcagcgcagaac
ctgttggaagccctggagaaaagtaaggatacaaccttacccaagttcctttatgcgctg
ggtattcgcgaggtaggggaagccactgcacgcaatctggcaagatattttgggagcttg
gaatccctgatgcaggccgatgaagaggcgctgcaacaggtggacgatgtcggtccgatc
gttgcgcattatgtggccgagttttttgagcagccacacaacctggaagaaattgaagct
ttgcagcaagccggcgtgcactgggaagacgaagttcaggaagagggcacacaacctctt
caggagcagacctgggtactgacgggaaaactggaggttctctcgcgcagtgaggcaaag
gactacctgcagcgattgggtgccaaagtggcgggcagtgtttccgcgaaaacacatacc
gtggtggcaggccctggcgcgggttccaaactgaacaaggcacgcgaattggatattccg
gtgctggatgaagacgagttcatgcaaatgttgcgcgagcagggcatcgaaatctga
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integrated database retrieval system
