KEGG   PATHWAY: mcep03050
Entry
mcep03050                   Pathway                                
Name
Proteasome - Mugil cephalus (flathead mullet)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mcep03050  Proteasome
mcep03050

Other DBs
GO: 0000502
Organism
Mugil cephalus (flathead mullet) [GN:mcep]
Gene
124995705  psme1; proteasome activator complex subunit 1 [KO:K06696]
124995918  psme2; proteasome activator complex subunit 2 [KO:K06697]
124996038  [KO:K11599]
124996514  psmb7; proteasome subunit beta type-7 isoform X1 [KO:K02739] [EC:3.4.25.1]
124996671  psmb10; proteasome subunit beta type-10 [KO:K02739] [EC:3.4.25.1]
124997795  [KO:K03036]
124998321  psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
124998981  psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
124999359  [KO:K03062]
124999556  [KO:K02730] [EC:3.4.25.1]
125000242  psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
125003899  psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
125004616  psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
125005326  psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
125005373  psmc3; 26S proteasome regulatory subunit 6A [KO:K03065]
125005586  [KO:K02728] [EC:3.4.25.1]
125005902  psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
125005914  psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
125006664  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
125006824  psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
125007373  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
125008889  [KO:K11598] [EC:3.4.25.1]
125009254  psmd1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
125009953  psmb6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
125010413  psma8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
125010668  psmb11a; proteasome subunit beta type-11a [KO:K11598] [EC:3.4.25.1]
125011275  psmb5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
125011595  psmd9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
125013257  [KO:K02730] [EC:3.4.25.1]
125013698  psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
125014059  psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
125014579  psma4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
125014793  psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
125015333  psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
125016864  psma2a; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
125016979  psmc4; LOW QUALITY PROTEIN: 26S proteasome regulatory subunit 6B [KO:K03063]
125017013  [KO:K03029]
125018188  [KO:K06691]
125018732  psme4a; proteasome activator complex subunit 4A isoform X1 [KO:K06699]
125019799  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
125019830  psmb13a; proteasome 20S subunit beta 13a [KO:K02739] [EC:3.4.25.1]
125019831  psmb8a; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
125019832  psmb12; proteasome 20S subunit beta 12 [KO:K02738] [EC:3.4.25.1]
125019833  psmb9a; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
125019879  psmb2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
125020357  [KO:K03029]
125021108  adrm1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
125022188  psme3; proteasome activator complex subunit 3 [KO:K06698]
125022319  [KO:K06699]
125022537  psmc5; 26S proteasome regulatory subunit 8 isoform X1 [KO:K03066]
125022712  psmd11b; 26S proteasome non-ATPase regulatory subunit 11B [KO:K03036]
125023782  psma6a; proteasome subunit alpha type-6a [KO:K02730] [EC:3.4.25.1]
125024075  psma3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
mcep04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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