Mugil cephalus (flathead mullet): 124995916
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Entry
124995916 CDS
T08342
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
mcep
Mugil cephalus (flathead mullet)
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mcep03036
]
124995916 (smchd1)
03400 DNA repair and recombination proteins [BR:
mcep03400
]
124995916 (smchd1)
Chromosome and associated proteins [BR:
mcep03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
124995916 (smchd1)
DNA repair and recombination proteins [BR:
mcep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
124995916 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
DUF1398
UFD1_N1
Motif
Other DBs
NCBI-GeneID:
124995916
NCBI-ProteinID:
XP_047424631
LinkDB
All DBs
Position
18:9405492..9427217
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AA seq
2021 aa
AA seq
DB search
MRRSGSQCPPAAASSLQLGRDVKRIRVYDLRFNEKEPKEKTVKTSSDFNNFCQALHKEFE
IRSYEVFVLTTTDRTLLDSDKFKELPDGSTLYLLKQETQALPRAIEEQISFTPHYNTITQ
CGMYEYYASEGQTSLPYALAELIDNSLSATAKTSGVRTIEIRMMFDETFGKPAVIVLDNG
CGMTSVQLKNWAVYRLSKFTRDNGTFASQGEGYVRPDPVPRSLNSDISYFGVGGKQAIFY
IGDSARMISKPKGSPDVHELILSKEEFEKKERSKEDIYRGFIKNRKPCDSAHVTKKEETF
LHSLIAEEKGKESFTAVVITGVLPEHIATLKNGFDAWTRQLAHVYHYYIHGVNGNVSSSS
SSTTSDESPKIDIQITLSERPLKQRVINLRDIEDDMQSLYIKAAADTFEFKASTGLDTGT
VEGIIRYHPFLYDKETYPEDPYSAQASPDDDDLDNESVLVNQTKGKRPIFECFWNGRLIP
YTTVSELRWCARPSKGATLPVECYNRFSGVLFTDDRFQVTTNKLTFIDLEQKLANNDTIF
TTVVSGQCPQEEISSAVPSIPAQVSDSIREEEKQAKRTGLPLLCSPDQKSSKRSKIEKDF
LQWLQNCHAQLDKQVKFLGYKGKITRTDVPTKKMQQPWATFSSIEWDGKTYKTGQLVKSQ
KTQRILYGTVVRFLLFGNYDVDVFATGGLVELSLEPRALHDATKIIPISKIDKTATDESI
KKVIDNDLAKLPEELQVEWPEGNPWLTKAAYAAGTPLGPVSVKILNKNGESLSKMPSTGQ
GQGLKLSVKLSIVRHDPKGDQEVDTFIAPYTSKWAFWFKKIETLSKLGKYTLKLNAMISE
SNVTVFGGKPLPSYSLDFTIKEGNAESFELGTFGPTIPVGVPFDIPVHIKDSYCHPTNPP
PNLKFTLSCSDLELNYDTVHISGTMFTIKGVRARGKVQNYPESTTYDLKVTLPGLKNDTK
IAKIGLLPGNAHSLLVRPEQNPVKIENGNSVAFHFEIHDEAGNITARPKQIVRCQVHGIP
AEFIDCSSTGTGHLTTQPINVDITEGEPEMLKLHFDMPNQKNIALVMRELKVLPSTRVSV
MELCSQVDDKLVLRNNEIIEWPAGGQLENLFYKLYDEAGREVLLTAEIASMIKVNWTGDV
NLEDLVKGKLPDIKVPTQVKDRRFYQVSYQDQSVSVSFTIVPHPDEPARLQVTLHQNTVR
LGETLPGNIFLELVDQYDNSTKALKPTCVEQMAVDAEGLDKSAVTFKWQESSGSVVVTGV
RFQGGSPGAREMCFSYCDYVERVIVKVSPGVPAKLELVSGPAQPFQVLNDDCISEPFLIQ
LLDQWGNPSSDQRVVVDLKSSPSTLKVKADVTSQPVNADGKASFTVKGVSGPKGYYQLVF
KGSFNKKPIPGPSVNLIVIPDPNKPVGLSVEYDTSAKCLAGGTFPVFSVTVVSDEGSPIT
TFNPAHVSMRLWSGESSGKTCPQTATEFKCSKPMENEKNDCFRFRDKEIPEHVGKHTIQF
FLRIDKENFLCSDQIFINVVANQPVKLGPDSQPPTPVVSYSKDITSRTLVEDMTLRIMDL
YGNPAGQDLDGKVVVSIKCPNGQRNKTLPQLEGEANNFQINLEGGKAHITRLAVVENSPG
ENGSSYVLVFKPEVPMLPTPLAPFELSFRFYNDADCQQKMSELTKKKDEFTRTIMSHTET
FSMQKELLQMLTALHQDLSMKEAYFRNELDRRNLKIPQPASSTSIDRILKEKKTEADQIL
KTSRRVCTLRDNFRGQQDVLGMVGHLAFVEDDAAAWVISWHIRGDMDCVITKTTAAARKI
FEDTHGRQQVIPLDSVYVPPGQRPLPHIRNGRRLFDPPGNPVFARDLLIYPQDPMSCDIA
FKNLLGDTIVIDDLTSAQNYRNAVVQTKAPCPTILTRQGHRVSGKGKFGGAQNRAPERSR
EPTFGAPLPQQYYALNEHIDLLTKYQSALKKKVDAEKDRETHIKHMNSPEMLKNQKEMEE
AKKHLQEIDQQLASASGRARKRGPGNAGEPSGISTKRTRPC
NT seq
6066 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcagtggatctcagtgtcctcctgctgctgcatcctccctgcagctgggacga
gacgtgaagaggatccgtgtatatgacctccgcttcaacgagaaggagcctaaggagaag
accgtgaaaacgagttcggacttcaataacttttgtcaggctctgcacaaggaatttgaa
atccgttcctatgaggtatttgtcttgaccacgactgataggacactcctggattctgac
aaatttaaggagcttccggatggcagcaccctctatttgttaaaacaggagacacaggct
ctgccgagggcaatagaggagcagataagtttcacgcctcattataacacgataacccag
tgtggcatgtatgagtactacgccagtgagggccagacgtcattaccctatgcgcttgct
gagctcattgacaacagtctttcagccacagctaaaaccagtggagttaggacgatagaa
atacgaatgatgtttgatgaaacttttgggaaacctgctgtcattgtccttgataatggg
tgtggcatgacctctgtacagctcaagaactgggcagtgtatagactctccaaatttaca
agggataacggcacatttgcgagtcagggagagggttatgttcggcctgatcctgtacct
cgcagtcttaatagcgatatatcctactttggagttggaggcaaacaggccattttctac
attggagattcagcaaggatgatcagcaaaccaaaaggctctccagatgttcatgaactg
attctgtcgaaagaggaatttgagaaaaaagagaggagcaaagaggacatttatagggga
ttcatcaaaaacagaaagccttgcgactctgcacacgtgactaagaaagaagagaccttc
ctccattccctcattgctgaagaaaaagggaaagaaagcttcacagccgtggtcatcacg
ggggtcctgcctgagcatatcgccaccctgaaaaacggttttgatgcgtggaccagacag
cttgcgcacgtgtatcactattacattcatggagtcaatggtaacgttagtagcagtagc
agctcaactacctcagatgaatcccctaaaattgacattcagatcactttatccgaaagg
cctctcaaacaacgcgtgatcaatctcagggacattgaagacgacatgcagagtctgtac
attaaagctgctgcagacacgtttgagttcaaggcctccactgggttggacaccggcaca
gtggagggaatcatccgctatcatcccttcctctatgacaaggagacttaccccgaagac
ccatattctgcacaagcatccccggatgatgatgacttggataatgagtctgtactcgtg
aatcagacaaaaggaaagaggccgatctttgaatgtttctggaatggaaggctcatccct
tacaccacagtgtctgagttacgctggtgtgctcggcccagtaaaggtgctacgctgcct
gtggagtgttacaatcggttttcaggcgtgcttttcactgacgacagattccaggtcacc
acaaacaagctcaccttcatcgacctggaacagaaactagcgaacaacgacacgatcttc
acaaccgttgttagcggacagtgtccgcaggaagagatcagctctgcagttccctccatc
cccgcacaagtcagcgacagtataagagaggaagaaaagcaggctaagagaacaggtctg
ccactgctttgctcaccagaccagaaatcttccaaaagaagtaaaatcgagaaggacttc
ctgcagtggcttcaaaactgtcatgcgcaattggacaaacaagtgaaatttctgggctac
aaagggaaaataacacgaacagatgtacctacgaagaaaatgcagcagccctgggccacg
ttctcctccattgagtgggacggcaaaacgtacaaaacaggacaacttgttaagtctcag
aagacgcagcgcattctgtatggtaccgtggttcgttttttgctgtttggaaattacgac
gtagatgtctttgccacaggaggactagtggaactgtctctcgagcccagagcacttcac
gacgcgacgaagatcatacccatttccaagattgataaaactgccactgatgaatccatt
aagaaagtgatcgacaatgacctcgccaagcttccagaggagctgcaagtagagtggcca
gaaggcaacccttggctaacaaaggccgcctatgctgctgggacccctttggggcctgtc
agtgttaaaattctgaacaagaatggagagtcgttatccaagatgccatcaacaggccag
ggacaagggctgaaactgagtgttaagctcagcatagtccgccatgatcctaaaggagac
caagaggttgatacttttatcgcaccatatacatcaaagtgggcattctggttcaaaaaa
attgagactctgagtaagctggggaagtacacactgaagctgaacgccatgattagtgaa
agtaatgttaccgtctttggaggcaaaccacttccaagctactcactggatttcaccatc
aaagagggaaatgcggagagctttgaattgggtacgttcggcccaactattcctgtaggg
gtgccatttgacattcctgtgcacatcaaggattcttattgccacccgacaaatcctcct
cccaacctcaaatttacactttcatgcagtgacctggagctgaactacgacacagtgcac
atcagcgggaccatgtttaccatcaaaggtgttagagcaagaggaaaagtccagaattac
cccgagtccacgacttacgacctgaaagtgaccctgcctggcctaaaaaatgacacgaag
attgctaagatcggtcttcttcctggtaacgcgcattcccttcttgtgaggcctgaacaa
aacccagtcaaaatcgagaatggaaactcggtcgcttttcattttgagattcatgatgag
gcagggaacatcacagctcgacccaagcagattgttcgctgccaggttcatgggattcct
gctgaatttattgactgcagcagcacaggaacaggccaccttacgacacaacctataaac
gtggacataaccgaaggagaaccagaaatgctcaaacttcactttgacatgccgaatcag
aagaacatagcgctggtgatgcgggagctgaaggtgctgcctagcacacgggtctccgtg
atggagctctgcagtcaggttgatgacaagctggtgctgaggaacaatgaaattatagaa
tggccagctggaggacagctggagaacttgttctataagctgtatgatgaggccggcagg
gaagtactgctcactgctgaaatagcctccatgatcaaggttaactggactggagatgtc
aatctggaagatctggtcaaggggaagctgcctgatataaaggtgcccacgcaggtgaag
gaccggcgcttctaccaggtgtcctaccaagaccagagtgtatctgtctccttcaccata
gtgcctcatccggatgaaccagcacggctacaagtaacccttcaccaaaacacagtgagg
ctcggtgaaaccctgcctggaaacatattcttggagcttgttgaccagtacgacaattca
accaaggcgcttaagcccacctgtgtggaacaaatggcagtggatgccgagggcttggac
aaatcagccgtcacttttaaatggcaggagagcagcggttctgttgtagtgacgggcgtg
cgtttccagggaggatcacccggcgccagagaaatgtgctttagctactgtgactacgtg
gagcgtgtcatagttaaagtgtccccgggggtccctgcaaagcttgaactagtcagtgga
cctgcacagccttttcaggtgttaaatgacgattgcatctctgagccgttcctcatccaa
ctgttggaccagtggggaaatccgtcctcggaccagagggttgtggtagatttgaagtct
tcaccgtcaacgctcaaggtgaaggcagatgttacttcacaacctgtgaatgcagacggg
aaagcctctttcactgttaaaggtgtgagtggtccaaaggggtactatcagctggtattt
aaaggttccttcaacaagaagcccatccctggtccatcagtgaacctcattgtcatccct
gatcctaacaaacctgtcggcctgtcagtagagtacgacactagtgctaaatgtctcgct
ggaggaaccttcccagttttctcagtgaccgtggtgtctgacgaaggaagcccgattacg
acttttaacccagctcatgtgtccatgaggctgtggagcggagagtcctcaggaaaaacg
tgcccacaaacggccactgagttcaaatgtagtaaacccatggaaaatgaaaagaacgac
tgttttcgctttagagataaagaaatcccagagcatgttgggaagcacaccattcagttt
tttctgcgtattgacaaagaaaacttcctgtgcagtgatcagatttttatcaatgtggtg
gccaatcagcctgtcaaactgggaccggactctcagcctccaaccccagttgtttcctac
agtaaggacatcaccagccgaaccttggtggaagatatgactctgaggataatggatttg
tatggaaacccagcggggcaggacctggacgggaaagtggtcgtctctataaagtgccct
aatggacagagaaacaaaacacttcctcagcttgaaggagaagcaaataactttcagatt
aacttggaaggaggaaaagcccacataactaggctggctgtcgtggaaaatagccccggt
gagaacggcagctcatacgtcctcgtcttcaagcctgaagtgccgatgcttccaacgccc
ctggctccttttgagctctccttccgtttttacaatgatgcagactgccaacagaaaatg
tctgagctgaccaagaagaaagatgagttcaccaggaccattatgtctcacacggagacc
ttcagtatgcagaaggaactcctccaaatgttgacagctcttcaccaagatctatctatg
aaagaggcttactttagaaatgagctggaccgaagaaacctgaaaattccacaacctgca
tccagcacaagtattgacagaatcctaaaggagaagaaaaccgaagctgatcagattttg
aaaacgtccagaagagtctgcactctccgtgacaacttcagggggcagcaggatgtttta
ggaatggttggacacctggcttttgtggaggacgacgctgctgcttgggttatctcttgg
cacatcaggggcgacatggactgtgtcatcaccaagacaacggcggcagctcggaagatc
tttgaggacacgcatgggaggcagcaggtcatacccctggacagcgtttatgtgccaccg
ggacaaaggccactgccacacataagaaacggccgcaggctctttgatcctcctgggaac
ccagtctttgccagagatctgctgatttacccccaagaccctatgagctgtgacatcgca
tttaaaaacctcctcggagatacaatcgtgatcgatgacctgacctcggcacagaactac
agaaatgcggtggtgcaaaccaaggcaccgtgtcccaccattctcaccaggcagggacac
agggtcagtggcaagggcaagttcggaggagcgcagaacagggccccggagaggagccga
gaaccaacgtttggagctcccctcccacagcagtactacgccctgaacgaacatatagac
ctgctgactaagtaccagtcagctctgaagaagaaagtggatgcagagaaagacagagaa
acccacataaaacatatgaactctcctgaaatgctgaaaaatcaaaaggagatggaggaa
gccaagaagcacctgcaagagattgaccaacaacttgcatcggcatcagggagagcacgg
aaacggggccctgggaacgctggggagccatctggcatcagtacaaaaaggacaaggcct
tgttaa
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