KEGG   Momordica charantia (bitter melon): 111013385
Entry
111013385         CDS       T05045                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111013385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcha03021]
    111013385
Enzymes [BR:mcha01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     111013385
Transcription machinery [BR:mcha03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     111013385
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 111013385
NCBI-ProteinID: XP_022143510
UniProt: A0A6J1CP02
LinkDB
Position
Unknown
AA seq 1476 aa
MIHMEDEQDSELQIPSGLISGVHFSVSTQEDTENISVISVDATGEVSDPKLGLPNPSYQC
STCGASVLKCCEGHFGAIQFPFTIIHPYFLSEVAQVLNKVCPGCKTIRQELWGKVEDPTS
SYHRPKGCRYCFGSLKEWYPPMKFKLSSSDMFRKSIIMVEVKENMSKKYQKRVARGGLPP
DYWNFIPKDEQQEESYCRPNRKILTHAQVRYLLKDIDPKFLKKFVPMTDSLFLNCFPVTP
NCHRVSEMAHSFSNGQRLIFDERTRAYKKLVDFRGTANELGSRVLDCLKISKLSPEKLQS
KDLVYQQKKIKDTATSSCGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
LQISEHLSVWNMKKLSTSCYLHLVEKGEIFVRRGGRLVRVRNVLELNMGDTIYRPLADRD
VVLVNRPPSIHQHSLIALSVKVLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
ELRELVSLERQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLFS
PAIVKAPSLRSCAWTGKQLFSIFLPPDFDYSSPTHCVYIRNGELISSEGSYWLRDTGRNL
FQALIEHCQGKTLDILRDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ
EAEETCNLKQLMVDSNKDILAGDNEGNQNVLSIAVERLCHEKQKSVALNQASVDAFKKVF
RDIQNLVYKYSSKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFGLPHRLSCSA
WNSQKMPCYIQKDGLSYRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP
GTLTRRLTFLMRDIYNAYDGTVRNAYGNQLVQFSYDIDRDSSARISNEFDSEDNYANRVT
GGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNCNKQTFSLFLSEK
LAKRSYGFEYGALGVKSHLERVMLKDIVSSVMIIFAPQPCRKKHISPWVCHFHVCKENLK
KRRLKMSSVIHSLNVRCDSVRKEAKTNLPYLQITTQDCPIADSQKEDGDTVCLTTTIVEH
TKNSFLQLDFIRDLLIHFLLGTVIRGFAEIERVDIAWNDRPKVPKRHCNSHGELYLRVTM
SGEGNSRFWATLMDNCLQIMDLIDWSRSHPDNTHSLCMAYGIDSGWKYFLNSLVSATSDI
GKSIRLEHLMLVANCLSATGEFVGLNVKGLSRQREHALVKTPFMQACFSNPGACFVKAAK
AGTKDNLSGTLDALAWGKMPSMGTGAQFDILYSGKGHELSKPVDVYNLLGGQSICEKQNV
KIESLDKNNTFEKYSAQLVHKNGGSTIKGLKKFNSVSKSILRQFLTLNDVQKLSHALRSI
LHKYPLNHRLSEGDKSTLMMALYFHPQRDEKIGAGAQDIKIGCHSKYQNTRCFILIRSDG
TTEDFSYHKCVLGALEIIAPHRVKAYQSKWLQEKFE
NT seq 4431 nt   +upstreamnt  +downstreamnt
atgatacacatggaagatgaacaggacagcgagctacaaattccatctggtctcattagt
ggtgtacattttagtgtttctactcaggaagatacggagaatatatcagtcatatcggtt
gatgcaactggcgaggtatctgatcctaagttgggacttccaaatccatcttatcaatgc
tccacatgcggtgctagcgttctaaaatgttgtgaaggtcattttggggctatccaattt
ccatttactataatccatccctattttctctccgaagttgcacaagtgttgaataaagtc
tgtccagggtgtaagactatcaggcaggaactatggggcaaggttgaggatccaacatct
agttaccatcgacctaaaggttgcagatactgttttggaagtctaaaagagtggtatccg
ccaatgaagtttaagctttcatcttctgatatgttcagaaaaagtataattatggtggaa
gtgaaagaaaatatgtcgaagaagtatcaaaagagggtggctagaggaggattgccccct
gattactggaattttatccccaaagacgaacaacaggaagaaagttattgtagaccaaac
aggaaaatcctaacgcatgctcaggtccgttatttgttgaaagacattgacccaaagttt
cttaaaaagtttgtgcccatgacagattcactgtttctaaactgtttccctgtgactcca
aactgtcatcgtgtgtctgaaatggcacattcattttccaatgggcagcgtttaatattt
gatgaaaggaccagggcttacaagaagctggttgattttagagggacagctaacgagtta
ggttctcgcgttctcgattgtctcaaaatttcaaagcttagtccagagaagttacaaagt
aaagatttggtttaccagcaaaagaaaattaaggacactgctactagctcatgtggtttg
agatggatcaaagacgttgttcttggaaagcggagtgaccattgtttccgcatggttgtc
gttggtgatccaaacattgagttaagtgaaattggtataccttgtcatgttgcagagagg
ttgcaaatatctgagcatctgagtgtgtggaatatgaaaaaattaagtacttcttgttac
ctacatcttgttgaaaagggagagatctttgttcgtcgtggaggtcgcctcgttcgtgta
cgcaatgttcttgaacttaatatgggggacactatatataggcctctagctgacagggat
gttgtgttggtcaatcgaccaccatccatccaccaacactcacttattgctttatctgtc
aaggttcttcctgtctcctcagttctttccttaaacccactttgttgttctcctttccgt
ggagattttgatggtgattgccttcatggttatgttcctcaatcacttgaagcccgagtg
gagcttagagagctggtttctctcgagagacagttgatcaatggccaaagtggtagaaat
ctgctgtcacttagtcatgatagtttaactgctgctcatttaataatggaagatggagtt
tctttaaatcttttccaaatgcagcagttgcaaatgctcgctttacatcaattgttttcc
ccagcaattgtaaaagctccttcacttagaagttgtgcttggactggaaaacaattattc
agcatcttcctgcctcctgattttgattattcttctcctactcactgtgtttatattaga
aatggagaacttatatcttctgaaggatcttattggctacgcgatactggcagaaacctc
tttcaagctcttattgaacattgtcagggaaagacccttgacatcttgcgtgatgctcaa
ggagttctctgtgaatggttatcaatgaggggcttgagtgtttcactttcggacttgtac
ctttctgttgattcatactcacacaaaaacatgatggatgatatcttttgtgggttacaa
gaagcagaggaaacatgtaatttaaaacagctgatggtggattcaaataaggatatcctt
gctggagataatgaaggtaatcaaaatgtgttgtctattgcagtggagcgtttatgtcac
gagaagcagaaatctgttgctctaaatcaagcttctgttgatgctttcaagaaagttttc
cgtgatatacaaaatctagtttataagtattctagtaaagacaattcacttctaaccatg
tttaaggctggaagcaaaggtaacttgctgaaattagttcagcatagcatgtgtctcggc
ttgcagcactctttggttcctctttcttttgggcttccacatagactctcgtgttctgca
tggaatagtcagaagatgccttgttatattcagaaggatggtctttcttaccgtactcag
tcttttattccatatgctgtggttgagaactcatttctgtcagggctaaatccttttgag
tgttttgctcattcagtgacaaatcgagatagctcttttagtgataatgctgaagttcct
gggactttaacacgacgacttacatttttgatgcgggatatatataatgcatatgatgga
acagtgaggaatgcatatggaaatcagctagttcagttctcttatgatattgatagagac
tcctccgctagaatctctaatgaatttgatagtgaggataattatgcaaaccgtgttact
ggtggtcatcctgttggttcattggccgcttgtgctatctctgaagctgcatatagtgct
ttggaccaaccaattagtctactcgaagcttctccattgctaaacctaaagagagtgctg
gagtgtggttcaaagaggaattgtaacaaacaaaccttttcattgttcttatcggagaaa
cttgcaaaacgaagttatggatttgagtatggagctttaggagtcaagagccatttagaa
agagtaatgctaaaagatattgtgtctagtgtcatgataatcttcgccccgcagccctgc
cggaaaaagcatattagtccttgggtttgccactttcatgtatgcaaggaaaatttgaag
aaaagacgattgaaaatgagttctgtcatccattcccttaatgtgcggtgtgactctgtg
agaaaagaagcaaaaacgaatttaccctatctgcagataacaacccaggactgtcctata
gctgattcacagaaagaagatggtgatacagtgtgcttaactactacaatagtggagcac
acaaaaaattctttcttgcaattagatttcattcgagatttgctgattcatttccttctt
ggtacagttataagaggctttgcggagattgaaagggtagatattgcatggaatgatcgg
ccaaaggtaccaaaacgtcattgtaattctcatggtgagctctacttgcgagtgaccatg
tctggagaaggcaattcaaggttttgggcaactcttatggataactgcctccagataatg
gatttgattgattggtctcgtagtcatccagataacactcacagtctctgtatggcatat
ggaatagattctggatggaagtactttctcaatagtttggtgtctgcaacatcagatatt
ggcaaatctatacgtcttgaacatttgatgcttgttgcaaattgtctttccgctactgga
gagtttgttggtttgaatgtgaaaggattgtcacggcaaagggaacatgccttggtcaaa
acaccctttatgcaagcttgcttctctaatcctggtgcttgttttgttaaagctgccaag
gctggaactaaggacaatctttcaggaactctagatgccttggcatggggaaagatgcct
tccatgggaactggggcacagttcgatatcttatactctgggaaggggcatgagcttagt
aagcctgtcgatgtttataatctactgggtggccaaagcatttgtgagaagcagaatgtg
aagattgaatctcttgacaagaacaatacatttgagaaatatagtgctcagttagtgcat
aaaaacggcggttctaccatcaaagggcttaaaaagttcaatagtgtatctaaatcaatt
ttaaggcaatttttgactttgaatgatgttcagaagctgtctcatgcattgagaagcatt
ttacacaagtatcctttaaatcacagattaagtgaaggggacaagtcaactttgatgatg
gctttatactttcatcctcaaagggatgaaaagattggtgctggagcacaggacataaag
attggttgccactcaaagtaccaaaatacacgttgctttatattgatacgatctgatggg
acgacagaagatttttcttaccacaagtgtgttttaggtgctttggagatcatagctcct
catagagtaaaggcatatcagtcaaaatggttgcaagaaaagtttgagtaa

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