Micromonospora chalcea: PVK74_27565
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Entry
PVK74_27565 CDS
T08919
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mchl
Micromonospora chalcea
Pathway
mchl03030
DNA replication
mchl03410
Base excision repair
mchl03420
Nucleotide excision repair
mchl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mchl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PVK74_27565 (ligA)
03410 Base excision repair
PVK74_27565 (ligA)
03420 Nucleotide excision repair
PVK74_27565 (ligA)
03430 Mismatch repair
PVK74_27565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mchl03032
]
PVK74_27565 (ligA)
03400 DNA repair and recombination proteins [BR:
mchl03400
]
PVK74_27565 (ligA)
Enzymes [BR:
mchl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PVK74_27565 (ligA)
DNA replication proteins [BR:
mchl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PVK74_27565 (ligA)
DNA repair and recombination proteins [BR:
mchl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PVK74_27565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PVK74_27565 (ligA)
MMR (mismatch excision repair)
DNA ligase
PVK74_27565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PVK74_27565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_8
DUF5818
EHD_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WDP99567
LinkDB
All DBs
Position
6075598..6077733
Genome browser
AA seq
711 aa
AA seq
DB search
MSEEAVPTAADAAQEAAAGAEPIPAARERHATLSQELTEHQYRYYVLDAPTITDAEFDAQ
LRELEALEAEYPALRTPDSPTQRVGGTFSTDFTPVAHAERMLSLDNAFADEELAAWAERV
ERDAGGPVPYLCELKVDGLAINLTYSKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLT
PADDFPDVPDLIEVRGEIYFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTA
SRPLRLVVHGIGARTGFRPAAQSESYAALKAWGLPTSDRWRVVDDLAGVADYIAYYGKHR
HDVEHEIDGVVVKVDPVSIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIDVNVGRTGRV
TPFAVLEPVRVAGSTVALATLHNAREVERKGVLIGDTVVLRKAGDVIPEVLGPVVELRPA
DARPFVMPTTCPACGTPLAPAKESDVDIRCPNGRACPGQIRERVFYLASRKVLDIEVLGE
KGAAALLDAQIITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNAVKLLDNLAEAKERDLWR
VLVALSIRHVGPTAAQALARHFRSVDAIEAAGEEELSSVDGVGPTIAASVKEWFAVDWHR
DIVRKWAEAGVRMAEEAADEGPRPLDGVTVVVTGTLSGFSRDQAAEAIQVRGGKVTGSVS
KKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLLDSGPDAARGVARVED
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaagaagcggttcccactgcggccgacgcggcccaggaggcggcggcgggggcc
gagccgatcccagcggcccgggagcggcacgccacgctcagtcaggagctgaccgaacac
cagtaccgctactacgtgctggacgcgccgacgatcaccgacgcggagttcgacgcgcag
ctgcgggagctggaggcgctggaggcggaatacccggcgctgcgcacccccgactcgccc
acccagcgcgtcggcggcaccttctccaccgacttcacgccggtcgcccacgccgagcgg
atgctctcgctcgacaacgccttcgccgacgaggagctggccgcctgggccgagcgggtc
gagcgcgacgccggcggcccggtgccctacctgtgcgagctgaaggtcgacgggctggcc
atcaacctgacctactccaagggccggctggtgcgcgccgccacccggggcgacggccgc
accggcgaggacgtcaccgcgaacgtgcgcagcatcaagggcgtgccggcccggctgacc
ccggccgacgacttccccgacgtgccggatctgatcgaggtacgcggcgagatctacttc
ccggtggccgcgttcgccgacctcaacgcgagcctggtcgagcagggcaaggcgccgttc
gccaacccgcgcaacgccgccgccggcagcctgcgccagaaggacccgcgggtcaccgcc
tcccgcccgctgcgcctggtggtgcacggcatcggcgcccgcaccggcttccggccggcg
gcgcagtccgagtcgtacgccgcgctcaaggcgtgggggctgcccaccagcgaccgctgg
cgggtggtggacgacctcgccggcgtcgctgactacatcgcctactacggcaagcaccgg
cacgacgtcgagcacgagatcgacggcgtggtggtcaaggtcgatccggtctccatccag
ggccgcctcggctcgaccagccgggccccccgctgggcgatcgccttcaaatacccgccg
gaggaggtgaacacgaagctgctcgacatcgacgtcaacgtcgggcgcaccggccgggtc
accccgttcgccgtcctggaaccggtccgggtcgccggctccacggtcgcgctggccacg
ctgcacaacgcccgcgaggtcgagcgcaagggcgtgctcatcggcgacacggtggtgctg
cgcaaggccggcgacgtgatccccgaggtgctcggcccggtggtcgagctgcgcccggcc
gacgcccgtccgttcgtcatgccgaccacctgcccggcctgcggcacgccgctcgcgccg
gccaaggagagcgacgtcgacatccgctgccccaacgggcgcgcctgccccggtcagatc
cgcgaacgggtgttctacctggccagccgcaaggtgctcgacatcgaggtgctcggcgag
aagggcgcggcggcgctgctggacgcgcagatcatcaccaacgagggcgacctgttccag
ctcgacgccgagcagttgagccggtcaccgttcttcgtcaacaaggacggcagcctgggc
agcaacgcggtcaagctgctcgacaacctggccgaggccaaggaacgcgacctgtggcgc
gtgctggtggcactgtccatccggcacgtcggcccgaccgccgcccaggcgctcgcccgg
cacttccggtcggtcgacgccatcgaggccgccggcgaggaggagctgtcctcggtggac
ggcgtcggcccgaccatcgccgccagcgtcaaggagtggttcgccgtcgactggcaccgc
gacatcgtgcgcaagtgggccgaggcgggcgtacggatggccgaggaggccgccgacgag
gggccacgaccgctcgacggcgtcaccgtcgtggtcaccggcacgctcagcgggttcagc
cgtgaccaggccgccgaggcgatccaggtcaggggcggcaaggtgaccggctcggtctcc
aagaagacggggttcgtggtggtcggcgacaacccgggttccaaggccgacaaggcggcc
accctgaaactgccgatcctcgacgaggacggcttccgggtgctgctggactccggcccg
gacgcggcccgcggggtggcccgggtggaggactga
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