Paramicrobacterium chengjingii: HCR76_07300
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Entry
HCR76_07300 CDS
T07557
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mchn
Paramicrobacterium chengjingii
Pathway
mchn03030
DNA replication
mchn03410
Base excision repair
mchn03420
Nucleotide excision repair
mchn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mchn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCR76_07300 (ligA)
03410 Base excision repair
HCR76_07300 (ligA)
03420 Nucleotide excision repair
HCR76_07300 (ligA)
03430 Mismatch repair
HCR76_07300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mchn03032
]
HCR76_07300 (ligA)
03400 DNA repair and recombination proteins [BR:
mchn03400
]
HCR76_07300 (ligA)
Enzymes [BR:
mchn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HCR76_07300 (ligA)
DNA replication proteins [BR:
mchn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HCR76_07300 (ligA)
DNA repair and recombination proteins [BR:
mchn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HCR76_07300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCR76_07300 (ligA)
MMR (mismatch excision repair)
DNA ligase
HCR76_07300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCR76_07300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QPZ40237
UniProt:
A0ABX6YN51
LinkDB
All DBs
Position
1492553..1494850
Genome browser
AA seq
765 aa
AA seq
DB search
MSVADRRLCNVTDASELSLEQAAEEARALTSRIIELRDAYYDRDTSLVSDHEYDEMMHLL
EALERAYPELQGQDSPTQTVGGYAETTLFAPVVHAERMLSLDNVFSDDELREWTTRTERA
AGRSIRYLSELKIDGLAVNLRYQNGRLVSAATRGDGVVGEDVTENVRYIPSIPRRLSGEG
HPELVEVRGEIFFPVAAFTALNERQQKAGEKVFANPRNAASGSLRQKSETKTDAQRKTMR
DRLSRLQMLVHGIGAWPNPPVASQSDIYELLADWGLPTSTHYRVFDDADGVVDFIHYYGE
NRGAVEHEIDGIVIKVDELALHDELGATSRAPRWATAFKYPPEQVNTRLLDIVVSVGRTG
RATPFAVVEPVHVAGSTVSQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDVR
DGSEREFVMPAECPECGSPLRPAKEGDIDLRCPNARSCPAQVRGRVEHIGSRGALDIEGL
GEVSASALTQPIEPSEPPLVTEAGLFDLSLADVFPIRTQVIDPETGLPRTDDAGTAKVVT
PFARKRTKKDGPFDPEAAEFSGDDDFVPSKNALELIENIELAKTKPLWRLLVALNIRHVG
PVAARALADWFGSLGAIREATRDELADVDGVGGIIADSLRAWFDVDWHRDIVSVWTDAGV
QFYTPGHRGPGAAAKQGGVLAGLTVVATGSLEGFSRDGAKEAIISAGGKAASSVSKKTDY
VAAGPGAGSKLAKAEELGLVILDAEQFARLVTEGPGFLSNADAEE
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttgcggatcgtagactgtgtaacgtgactgatgccagcgaattgagccttgag
caggccgcagaagaagcccgtgcgctgacgtcgcgaatcatcgagcttcgcgatgcgtac
tacgatcgcgatacgtcgctcgtttctgatcacgagtacgacgagatgatgcatctgctt
gaagcgctggagcgcgcgtatcctgaattgcaggggcaggactcaccgacgcagaccgtt
ggcggttacgctgagacaactttgttcgccccggtggttcacgccgagcggatgctcagt
ctcgacaacgtcttcagcgatgacgaactgcgtgagtggacgacgcgcaccgaacgagct
gcgggccgtagcatccggtatctgtctgaattgaagatcgatggtcttgctgtgaacctg
cgctatcagaacggccgtctggtgtctgccgccacgcgaggcgacggggtggtcggtgaa
gacgtcacggaaaacgtgaggtacattccatcgattccgcgccggctttcgggggaggga
catcccgaacttgttgaggttcggggagagatcttctttcccgtcgcagcgttcaccgcc
ctgaacgagcgacagcagaaggccggagagaaggtctttgcaaacccgcgtaatgcggcg
agcgggagcctgagacagaagtcggaaaccaagacagacgcgcaacggaagaccatgcgg
gacagactctcgcgactgcagatgcttgttcacggaatcggcgcgtggcccaacccaccg
gtagcaagccaatcagacatctacgagttgctcgcggactgggggcttccgacctcgacg
cactatcgagtgtttgacgatgcagacggggtcgtcgatttcattcactattacggagag
aaccgaggagcggtcgagcacgagatcgacggcatcgtcatcaaagtcgacgaactggca
cttcacgatgagctcggggcgacaagcagagcgccacgatgggcgacggctttcaaatat
ccgccagagcaagtgaacacgcgacttctcgacatcgttgtgagtgtcgggcgcacgggg
agggcgacgccatttgccgtcgttgaacccgtgcatgtcgctgggtcaacggtgagccag
gccacactgcacaaccaggacgttgtgaaagccaagggtgtgttgatcggcgataccgtc
gttctgcgcaaggccggagacgtcattccggagattcttggaccggtggttgacgtgcgc
gatggcagcgagcgtgagttcgtgatgccggcggaatgcccggagtgcggatcgccgctg
agaccggcgaaggaaggcgacatcgacctgcgctgcccgaacgcgcgctcgtgcccggca
caggttcgcggacgggtagagcacattggcagcagaggcgcacttgacatcgaggggctc
ggcgaggtgagtgcgtctgcactgacgcagccgatcgaaccctcagaacccccgctcgtg
acggaggcaggactcttcgaccttagcctcgccgacgtttttccgattcgcacgcaggtg
atcgatccagaaaccgggctgccgcgaacagacgacgcgggcacggcgaaggtcgtgacg
ccttttgcgcgcaagcgaacgaagaaagacggtccattcgaccccgaagcggccgagttc
tcgggagacgacgacttcgtgccatcgaagaacgctctcgagctcatagagaacatcgag
ctcgcaaagaccaaacctctctggcggctattggtggcgctcaatattcgtcacgtcggg
ccggttgctgcacgggcgctcgctgattggttcggatcgctcggcgcaatcagggaggca
acacgcgatgagctagccgacgttgacggtgtcggtggcatcatcgccgattcgcttcgc
gcctggttcgacgtcgattggcaccgcgatatcgtgagcgtctggacggacgcgggagtg
cagttttacactccgggccaccgggggccgggcgctgcggccaagcagggtggggtactc
gccggcctgactgttgtcgcaacggggtcactcgagggattctcacgtgacggcgcgaaa
gaggcaatcatcagcgcgggcggaaaggcggcctcgagcgtgtcgaagaagaccgactat
gtcgccgcgggccccggagccggctcgaagctcgccaaggccgaagagcttggtcttgtc
attctcgacgccgagcagttcgcgcgcctcgtcacagaggggcccggcttcctctcgaac
gcagacgctgaggaatag
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