Mycolicibacterium chitae: MCHIJ_46160
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Entry
MCHIJ_46160 CDS
T06603
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcht
Mycolicibacterium chitae
Pathway
mcht03030
DNA replication
mcht03410
Base excision repair
mcht03420
Nucleotide excision repair
mcht03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCHIJ_46160 (ligA)
03410 Base excision repair
MCHIJ_46160 (ligA)
03420 Nucleotide excision repair
MCHIJ_46160 (ligA)
03430 Mismatch repair
MCHIJ_46160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcht03032
]
MCHIJ_46160 (ligA)
03400 DNA repair and recombination proteins [BR:
mcht03400
]
MCHIJ_46160 (ligA)
Enzymes [BR:
mcht01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCHIJ_46160 (ligA)
DNA replication proteins [BR:
mcht03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCHIJ_46160 (ligA)
DNA repair and recombination proteins [BR:
mcht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCHIJ_46160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCHIJ_46160 (ligA)
MMR (mismatch excision repair)
DNA ligase
MCHIJ_46160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCHIJ_46160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
HHH_3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BBZ05179
LinkDB
All DBs
Position
complement(4821972..4824086)
Genome browser
AA seq
704 aa
AA seq
DB search
MVSPADPDLGDAVEADPQEADLRREWQDLADEVRDHQFRYYIRDAPIISDGEFDALLGRL
NALEEQHPELRTPDSPTQLVGGAGFATEFAPAEHLERMLSLDNVFNTDELAAWTSRLRAE
IGENQNFLCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIEGIPLRLTGSD
EYPVPAVLEVRGEVFFRVADFEALNASLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRL
RMICHGLGHVEGFTPTSLHDAYLALKSWGLPVSEHTARVQGLAAVEERIAYWGEHRHDVE
HEIDGVVVKVDDVSLQRRLGSTSRAPRWATAYKYPPEEATTKLLDIRVNVGRTGRVTPFA
YMEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDVRDGSERE
FVMPTTCPECGSPLAPAKEGDADIRCPNSRSCPAQLRERLFHMAGRGAFDIEGLGYEAAT
ALLQAGVIADEGELFTLTAEDLLRTELFTTQKGELSKNGERLLGNLDQAKAQPLWRVLVA
LSIRHVGPTAARALAGEFGSLEAIEAASEEQLAAVEGVGPTIAAAVVEWFTVDWHRAIVE
KWRAAGVRMADERDTSIERTLEGLSIVVTGSLAGFSRDQAKEAILVRGGKAAGSVSKKTA
YVVAGDAPGSKYDKAVELGVPILDEDGFRRLLEEGPDSSPGSDD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggtgagccccgctgaccccgacctcggagatgccgtcgaagcagatccgcaggaagcc
gatctgcgccgcgagtggcaggacctcgccgacgaggtccgtgaccaccagttccgctac
tacatccgggacgcgccgatcatctccgacggggagttcgacgcgctgctgggccggctc
aacgcgctcgaggaacagcatccggagctgcgcaccccggattcacccacccagctggtc
ggcggcgcgggtttcgctaccgagttcgcccccgccgagcatctcgaacggatgctgagc
ctggacaacgtcttcaacaccgacgagctggcggcctggacctcgcggctgcgcgccgag
atcggcgagaatcagaacttcctgtgcgagctgaagatcgacggggtcgcgctgtcgctg
gtgtaccgcgacggccggctcgagcgcggcgccacccgcggcgacggccgcaccggtgag
gacgtcacgctcaatgcccgcaccatcgagggcatcccgctgcggctgaccggcagcgac
gagtacccggtgccggcggtgctcgaggtgcgcggcgaggtgttcttccgcgtcgcggac
ttcgaggcgctcaacgccagcctggtcgccgagggcaagccgccgttcgccaacccgcgc
aacagcgcggcgggctcgctacggcagaagaatcccgccgtcaccgcgcggcgccggctg
cggatgatctgccacggcctcggccacgtcgagggcttcaccccgacctcgttgcacgac
gcgtacctggcgctcaagagctgggggttgccggtctccgagcacaccgcccgggtgcag
ggcctggccgcggtcgaggagcggatcgcctactggggcgaacaccgccacgacgtcgag
cacgagatcgacggtgtggtggtcaaggtcgacgacgtctcgctgcagcgccggcttggc
tccacctcccgcgcgccgcgctgggccacggcctacaagtacccgcccgaggaggccacc
accaagctcctcgacatccgggtcaacgtcgggcgcaccgggcgcgtcaccccgttcgcg
tacatggagccggtcaaggtggccggttcgacggtggggctggccacgctgcacaacgcc
tcggaggtcaagcgcaagggcgtgctgatcggcgacacggtggtgatccgcaaggccggc
gacgtcatccccgaggtgctcggccccgtcgtcgatgtccgcgacggctcggagcgcgaa
ttcgtcatgccgacaacgtgtcccgagtgtggcagcccgctggcgccggccaaggagggc
gacgccgacatccgctgtccgaactcgcgtagctgccccgcgcagctgcgggagcggctg
ttccacatggccggccgcggcgcgttcgacatcgaggggctgggctacgaggcggccacc
gcgctgctgcaggccggggtcatcgccgacgagggcgagctgttcaccctgaccgccgag
gatctgctgcgcaccgagctgttcaccacgcagaagggtgagctgtcgaagaacggtgag
cggctgctgggcaacctcgatcaggccaaggcccaaccgttgtggcgggtgctggtggcg
ctgtcgatccggcacgtcgggccgacggcggcccgcgcgctggcgggcgagttcggcagc
ctcgaggccatcgaggcggcctcggaggaacagctggccgcggtcgagggcgtggggccc
accatcgcggccgcggtcgtcgagtggttcaccgtcgactggcaccgcgcgatcgtcgag
aagtggcgcgccgccggcgtccggatggccgacgagcgcgacaccagcatcgagcgcacc
ctcgagggcctgtccatcgtcgtgaccggctcgctggccggcttctcccgcgatcaggcc
aaggaggcgatcctggtgcgaggcggcaaggcggccggctcggtgtcgaagaagaccgcc
tacgtggtcgccggcgacgcgcccggttccaagtacgacaaggccgtggaactcggcgta
cccatcctcgacgaggacgggttccgtcgacttctcgaagagggcccggacagcagcccg
ggctcggacgactga
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