Mesorhizobium ciceri CC1192: A4R28_10965
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Entry
A4R28_10965 CDS
T08712
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcic
Mesorhizobium ciceri CC1192
Pathway
mcic03030
DNA replication
mcic03410
Base excision repair
mcic03420
Nucleotide excision repair
mcic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4R28_10965
03410 Base excision repair
A4R28_10965
03420 Nucleotide excision repair
A4R28_10965
03430 Mismatch repair
A4R28_10965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcic03032
]
A4R28_10965
03400 DNA repair and recombination proteins [BR:
mcic03400
]
A4R28_10965
Enzymes [BR:
mcic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4R28_10965
DNA replication proteins [BR:
mcic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4R28_10965
DNA repair and recombination proteins [BR:
mcic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4R28_10965
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4R28_10965
MMR (mismatch excision repair)
DNA ligase
A4R28_10965
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4R28_10965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AMX93576
LinkDB
All DBs
Position
complement(2267851..2270055)
Genome browser
AA seq
734 aa
AA seq
DB search
MSEKPVDALTESEAEAELKRLAEVIAEHDRRYHTEDAPIITDAEYDALARRNLAIEERFP
ALVREDSPSLRVGAAPAEGFTKVRHAVPMLSLAKAYTDDDVADFIERGRRFFDRDKELDI
AFTAEPKIDGLSASLRYENGVFMQGATRGNGAVGEDITANLKTIADIPARLKGSDWPETI
EIRGEVYMTYAEFEALKQRSAAVGGQDYVNPRNTAAGSLRQKDPSVTASRNLKFFAYAWG
YTTADPAPTQYDSVQKFAEWGFKISPLMVRAKSADELIAHYHRIEEQRSALGYDIDGVVY
KVDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVG
GVVVENVTLHNEDYIKGLDSTGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPAD
AVPYEFPHTCPICGSPATREINEKTGKEDSRRRCTGELICPAQAVEGLRHFVSRGALDIE
GLGAENIDTFFNAGLIKTAADIFTLKDRRPAVTRALAERREEQARQREAASGKTRKNVRS
VEDRNYESLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLARTFSTIEELIRVGKE
TAAAEDPHTVFPSVNGIGDTVIDALRGFFGNERNDDVLEKLLEQVKPKPYVVTVSADSEV
AGKTVVFTGSLEKMTRSEAKAMAERLGAKVAGSVSAKTDLVVAGPGAGSKLKLASELGIE
VIDEDAWLARIGKA
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaaaccagtcgatgccctgaccgaaagcgaggccgaagccgagctgaagcgt
ctggcggaagtgatcgccgagcacgaccggcgctaccataccgaagacgcgcctattatc
accgacgcggaatacgatgcgctggcacggcgcaaccttgccatcgaggagcgctttcca
gcgctggtgcgcgaggattcgccatcgctcagggtcggtgcggcacccgcggaaggcttt
accaaggtgcgccatgcggtgccgatgctcagccttgccaaggcttataccgacgatgac
gtcgccgatttcatcgaacgcggccggcggttcttcgatcgcgacaaggagctcgacatc
gccttcacggccgagccgaagatcgacgggctttcggcttcgctgcgttacgaaaacggt
gtgttcatgcagggcgcaacgcgtggcaacggcgccgtcggcgaagacatcaccgccaat
ttgaagacgattgccgatattccagcgaggctgaaaggttcggactggcccgaaaccatt
gagatccgtggcgaggtctacatgacctatgcggaattcgaggcgttgaagcagcggtcg
gcggcggtcggcggccaggactacgtcaatccgcgcaacacggcggccggttcgctgcgc
cagaaggatccgtccgttaccgccagccgcaacctcaaattctttgcctatgcctggggc
tatacgacagcggatccggctccgacccaatatgattcggtgcagaaattcgccgagtgg
gggttcaagatcagtccgctgatggtgcgggcgaaatcggccgacgagttgatcgcgcat
tatcatcggatcgaggagcaacgttcggcacttggctatgatatcgacggcgtcgtctac
aaggtcgaccagctggaattgcagcgccgatgggggttcgtcaccggtgagccgcgctgg
gccgtcgcgcacaaatttccggccgaacaggcgatgacgactgtgcagaagatcgacatc
caggttggccgtaccggcacgctggcgccggtcgcgcggctggcgccggtcactgtcggt
ggcgtcgtggtcgagaatgtcacgctgcacaatgaggactacatcaagggcctggacagc
accggccagccgatccgcgacggcatcgacgtgcgcatcggcgatacggtggtgatccag
cgggcaggcgatgtcattccgcagatcgtcagtgtcgtcatcgacaagcggccggccgat
gccgtgccatacgaattcccgcatacctgtccgatctgcggctcgccggcgacgcgcgag
atcaacgagaagaccggcaaggaagattcccgccgccgctgcaccggcgagctgatctgc
ccggcgcaggcggtggaaggattgcgccacttcgtgtcgcgcggtgccctggacatcgag
gggctgggggccgagaacatagatacgttcttcaatgcgggattgatcaagaccgccgcc
gatatcttcacgctcaaggatcgccgtccggccgtcaccagggcgctggccgagcgccgc
gaggagcaggccaggcagcgcgaggccgcatcgggcaagacacgcaagaatgtgcgcagc
gtcgaggatcgcaactatgaaagcctcgacaagctgttcgcggccatcgactcgcgccgc
gagccggaactcgaccgtttcatcttcgcgctcggcatccgccatatcggcgaaacgacg
gcggccgtgcttgcccgcaccttctcgaccatcgaggagctgatccgcgtcggcaaggag
acagcggccgcggaggatccacatactgtcttcccatcggtcaacggcatcggcgatacg
gtgatcgatgcgctgcgcggcttcttcggcaatgagcgcaacgacgacgtgcttgagaag
ctgctcgagcaggtcaagccgaagccgtatgtcgtcaccgtctcggccgacagtgaggtc
gccggcaagacggtcgtgttcaccggctcgctggagaagatgacgcgctccgaagccaag
gccatggcggagcgcctcggcgccaaggtcgcgggctcggtttcggcgaagacggatctg
gtggtcgccgggccgggcgccggctccaaactcaagcttgccagtgagctcggcatcgag
gtgatcgacgaggatgcctggctggcgcggatcggcaaggcgtga
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