Mastomys coucha (southern multimammate mouse): 116079043
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Entry
116079043 CDS
T07224
Symbol
Smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116079043 (Smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116079043 (Smg6)
03032 DNA replication proteins [BR:
mcoc03032
]
116079043 (Smg6)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
116079043 (Smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
116079043 (Smg6)
DNA replication proteins [BR:
mcoc03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
116079043 (Smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
Motif
Other DBs
NCBI-GeneID:
116079043
NCBI-ProteinID:
XP_031210514
LinkDB
All DBs
Position
Unknown
AA seq
1418 aa
AA seq
DB search
MAEGLERVRISASELRGILATLAPQAGSRENMKELKEPRQRKDNRRPDLEIYKPGLSRLR
NRPKTKEASGNEEFKDEIVNDRDSSAVGSDAQLIKVCKELNSQQQNGPIDAENSQAQETF
SKTVGVEDRSLKIIKRIKKPDLQIYQPGRRSQTVPKASAGRADEEEILNQVEQLRMEEDE
WKGEAIKEEVINKPDKTEIEKSQSNDRVRTAKGEKGKKIEKGEGAKKVTDDSVQGKPGSV
KRYSRSDKRRNRYRTCSTSSAGSNNSAEGAGLTDNGCRRRRQDRTKERPRLKKQVSMSST
DSLDEDRVDEPDGLGSRRSSERKKHLERNWSGRGEGEQKSNGKENRGALRVTFDAETMSK
DSPVVRSVKDNVDRMKSDKSPSSGGKGSEKQEFRNPKQELRDRGRGILILPAHTALSVSS
SGSPESTSLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDD
EISPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYSPLQYPVGPTNGMYPG
PYYAGYPAPSGQYVCSPLPASTMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSR
DRISTEGMEKMAQLRTELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKD
PNIENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYA
LISAQRSMICQGDISRYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRR
KLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWRKGKKS
TFRHVGDDTTRLEIWIHPSHSRSAQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHG
KLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSE
ECRSVIQEQAASLGLAMFSLLVQRCTCLLKDSAKAQLSSPEDQEDQGDIKVSSFVPDLKE
LLPSVKVWSDWMLGYPDTWNPPPTSLDLPLQIAVDVWSTLADFCNILTAVNQSEVPLYKD
PDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQ
EEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDSEAEGSGSEDD
IRELRAKKLALARKIAEQQRRQEKIQAVLEDQSQMRQMELEIRPLFLVPDTNGFIDHLAS
LARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLERRFESR
DSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDYMPTSKEEPIR
LLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggttggagcgtgtgcggatctccgcgtcggaactacgagggatcctggcc
actctggctccgcaggccgggagcagagaaaacatgaaggaactaaaggaacccagacag
cgcaaagataataggcgcccagatttggaaatctacaagcctggactttctcgactaagg
aacagacctaaaactaaggaggcttctgggaacgaggaatttaaggatgagattgtgaat
gacagagattcttctgctgttgggagtgatgcacagcttattaaagtttgcaaggaattg
aacagccaacagcaaaatggccctatagatgcagaaaatagtcaggcacaggagactttt
tcaaagactgttggagtagaggaccgaagtctaaaaatcatcaagagaatcaagaagcca
gacctgcagatctaccagcctggaaggcgatcgcagactgttcccaaagcgtcagcaggc
agggcagatgaagaagagatcctcaaccaagtggagcagttgaggatggaggaggatgag
tggaagggagaagctataaaagaagaagttataaacaaaccggataaaaccgagatagaa
aagagccaaagtaatgaccgtgtaagaactgccaagggagaaaaggggaaaaagattgaa
aagggggagggagcaaagaaggtgacggatgattctgtccaaggaaagcctggctctgta
aagaggtactcgcgatcagacaagcgaaggaaccgctaccgcacttgcagtaccagctca
gctggtagcaacaacagtgcagagggagctggcctgactgataatggatgtcgccggcgg
cgccaggatcggaccaaggagaggccacgactgaagaagcaggtatctatgtcctcaact
gattccttagatgaggatagagttgatgagcctgatggattagggtcgcggaggagctca
gaaaggaagaagcatttagaaagaaattggtctggccgtggtgagggtgaacagaaaagc
aatggtaaagaaaaccgaggtgcccttcgtgtcacttttgatgcagaaaccatgagtaaa
gactcccctgtggtgaggtcagtcaaggataatgtcgatagaatgaagtctgacaaaagc
ccaagcagtgggggtaagggctctgagaagcaggagttcagaaacccaaaacaagaactt
cgagatcgtggacgtggtattctgattctgcctgcccacactgccctatctgtcagttca
tcaggttctccagagtctacatctttgggacctcgacttttatttggatctggtagtaag
ggatctcggagttggggccgtggaggcacgacccgccgactatgggacccaaacaatcct
gaccagaagcctgctctgaaaagccagacacctcagctacatttcttggacactgatgat
gaaattagccctacatcttggggtgattcacgtcaggcccaagcatcttattataaattt
caaaactctgataacccctattattaccctcggacaccaggccctgcctctcaatatccc
tatacaggctatagccctctgcaatacccagtgggccctacaaatggtatgtatccaggg
ccttactacgcaggctatcctgccccctcaggacagtatgtatgtagccctctccctgct
agtaccatgagtcctgaggaaatagaacagcacgtgcggaacatgcagcaacaggagctc
cataggcttctccgagtggctgataaccaggaactgcagctcagcaacctgctttccagg
gaccgcatcagcaccgagggcatggagaagatggctcagctcagaactgaactactgcaa
ctgtacgagcgctgtattctattagatattgaattctcggacaatcagaatgtagatcag
atcctgtggaaaaatgctttctatcaggtgattgagaagttcaggcagcttctcaaggat
ccaaatattgagaacccagaacagattcggaacagactcttggagctcttagatgagggc
agtgacttctttgatagtttgcttcagaaactacaggttacttataagttcaaactggag
gactacatggatgggcttgccattcgaagcaagcctttacgaaaaacagtaaaatatgcc
ttgatcagtgctcaacgaagtatgatttgccaaggagatatctctaggtatcgggagcaa
gccaacgatacagcaaactatgggaaggctcgcagttggtatctgaaggcccagcacatt
gctcccaagaatgggcgcccctataaccagttggctctcctggcagtatatacgaggcgg
aagcttgatgctgtatattactatatgcgcagtttagcagccagcaaccctatcctgact
gccaaggagagtcttatgagtttatttgaagagactaaacgaaaggctgaacagatggaa
aagaagcagcatgaggaatttgatctgagccctgatcagtggcgtaaaggaaagaagtct
actttccgacatgttggggatgacactactcgcctggagatctggattcatccatcacat
tctcggtccgcccagggcactgagtctgggaaggattctgagcaggagaatggtctgggc
agcctgagtcccagtgatctgaacaaaaggttcatcctcagttttctccatgcccatggg
aagctgtttacccggattgggatggagacattccctgctgtggctgagaaggtccttaag
gagttccaagtattgctgcagcacagcccatctcctattggaagtacccgtatgctgcag
cttatgaccatcaacatgtttgccgtgcataactcccagttgaaagactgcttctcagag
gagtgtcgttctgtaatccaggaacaagctgcatccttgggcttggctatgttttctcta
ctggtccagcgctgcacatgcctacttaaggactctgccaaagctcagctgtcctctcct
gaggaccaagaagaccaaggtgacatcaaggtatcttccttcgtcccggacctgaaggag
ctacttcccagtgtgaaagtctggtcagattggatgcttggctatccagacacctggaat
cctccacccacgtctttggatcttcccttgcagattgctgtggatgtgtggtcaacacta
gctgatttctgtaatatactgactgcagtgaatcagtctgaggtgccactgtacaaggac
ccggatgatgacctcaccctgcttatcctggaagaggatcggcttctctctggctttgtc
cccttgctggctgcccctcaggacccctgctacgtggagaaaacctcggataaggttatt
gcagctgactgcaaaagggtcacagtgctgaagtattttctggaagccctttgtggacaa
gaagagcctctgctggcattcaagggtggaaaatatgtgtcagtggcacccgtcccagac
accatgggaaaggaaatgggaagccaagagggaaaacaactggaagatgaggaagaagat
gtggtgattgaagactttgaggaagattcagaggctgaaggcagtgggagtgaggatgac
atcagggaacttcgggccaagaagctggctctagcgaggaaaatagctgagcagcagcgc
cgccaggaaaagatccaggctgttttggaagaccagagtcagatgaggcagatggaactg
gagatcagacccttgttcctcgtaccagataccaacggcttcattgaccacctggccagt
ctggctcggctgctggagagcaggaagtacatcctggtggtgcccctcatcgtgatcaat
gaactggatggccttgccaaagggcaggagacagaccaccgggctgggggctatgcccgt
gtggtgcaagaaaaggcccgaaaatccattgagttcctcgaacggagatttgagagtcgg
gactcctgcctgcgggccttgaccagccgtggcaatgaacttgaatctatcgccttccgg
agtgaggacattactggacagctgggtaacaacgacgacctgatcctctcctgctgcctg
cactactgcaaagacaaggctaaggactacatgcccaccagcaaagaggagccgatccgc
ctgctacgggaggtggtgttgctgactgatgatcggaaccttcgtgtaaaggcactgaca
agaaatgtgcctgtgagggacatcccagccttccttacgtgggcccaggtgggctga
DBGET
integrated database retrieval system
