KEGG   Mastomys coucha (southern multimammate mouse): 116090551
Entry
116090551         CDS       T07224                                 
Symbol
Traf6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
mcoc  Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04010  MAPK signaling pathway
mcoc04064  NF-kappa B signaling pathway
mcoc04120  Ubiquitin mediated proteolysis
mcoc04140  Autophagy - animal
mcoc04144  Endocytosis
mcoc04380  Osteoclast differentiation
mcoc04620  Toll-like receptor signaling pathway
mcoc04621  NOD-like receptor signaling pathway
mcoc04622  RIG-I-like receptor signaling pathway
mcoc04657  IL-17 signaling pathway
mcoc04722  Neurotrophin signaling pathway
mcoc04936  Alcoholic liver disease
mcoc05132  Salmonella infection
mcoc05133  Pertussis
mcoc05135  Yersinia infection
mcoc05140  Leishmaniasis
mcoc05142  Chagas disease
mcoc05145  Toxoplasmosis
mcoc05152  Tuberculosis
mcoc05160  Hepatitis C
mcoc05161  Hepatitis B
mcoc05162  Measles
mcoc05168  Herpes simplex virus 1 infection
mcoc05169  Epstein-Barr virus infection
mcoc05170  Human immunodeficiency virus 1 infection
mcoc05171  Coronavirus disease - COVID-19
mcoc05200  Pathways in cancer
mcoc05222  Small cell lung cancer
mcoc05235  PD-L1 expression and PD-1 checkpoint pathway in cancer
mcoc05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:mcoc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    116090551 (Traf6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    116090551 (Traf6)
   04064 NF-kappa B signaling pathway
    116090551 (Traf6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    116090551 (Traf6)
   04140 Autophagy - animal
    116090551 (Traf6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    116090551 (Traf6)
   04621 NOD-like receptor signaling pathway
    116090551 (Traf6)
   04622 RIG-I-like receptor signaling pathway
    116090551 (Traf6)
   04657 IL-17 signaling pathway
    116090551 (Traf6)
  09156 Nervous system
   04722 Neurotrophin signaling pathway
    116090551 (Traf6)
  09158 Development and regeneration
   04380 Osteoclast differentiation
    116090551 (Traf6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    116090551 (Traf6)
   05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
    116090551 (Traf6)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    116090551 (Traf6)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    116090551 (Traf6)
   05161 Hepatitis B
    116090551 (Traf6)
   05160 Hepatitis C
    116090551 (Traf6)
   05171 Coronavirus disease - COVID-19
    116090551 (Traf6)
   05162 Measles
    116090551 (Traf6)
   05168 Herpes simplex virus 1 infection
    116090551 (Traf6)
   05169 Epstein-Barr virus infection
    116090551 (Traf6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    116090551 (Traf6)
   05135 Yersinia infection
    116090551 (Traf6)
   05133 Pertussis
    116090551 (Traf6)
   05152 Tuberculosis
    116090551 (Traf6)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    116090551 (Traf6)
   05140 Leishmaniasis
    116090551 (Traf6)
   05142 Chagas disease
    116090551 (Traf6)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    116090551 (Traf6)
  09167 Endocrine and metabolic disease
   04936 Alcoholic liver disease
    116090551 (Traf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mcoc04131]
    116090551 (Traf6)
   04121 Ubiquitin system [BR:mcoc04121]
    116090551 (Traf6)
Enzymes [BR:mcoc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     116090551 (Traf6)
Membrane trafficking [BR:mcoc04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    116090551 (Traf6)
Ubiquitin system [BR:mcoc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    116090551 (Traf6)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 SlyX Sina_ZnF PspA_IM30 TRAF3_RING RING_XB3-XBAT31 DUF4455 Spc29 zf-RING_11 U-box DUF16 Rhabdo_ncap_2 UPF0242 DUF7310 PUMA_CC TMF_DNA_bd PKcGMP_CC DM
Other DBs
NCBI-GeneID: 116090551
NCBI-ProteinID: XP_031226998
LinkDB
Position
Unknown
AA seq 530 aa
MSLLNCENSCGSSQLSSDCCAAMAASCSAAVKDDSVSGSASTGNLSSSFMEEIQGYDVEF
DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD
NFAKREILSLTVKCPNKGCLQKMELRHLEDHQVHCEFALVNCPQCQRPFQKCQVNTHVIE
DCPRRQVSCVNCAVSMAYEEKEVHDQSCPLANTICEYCGTVLIREQMPNHYDLDCPTAPI
PCTFSVFGCHEKMQRNHLARHLQENTQLHMRLLAQAVHNVNLTLRPCDASSPSRGYRPED
PNYEETIKQLEGRLVRQDHQIRELTAKMETQSTYVSELKRTIRTLEDKVSEMEAQQCNGI
YIWKIGNFGMHLKSQEEERPVVIHSPGFYTGRPGYKLCMRLHLQLPTAQRCANYISLFVH
TMQGEYDSHLPWPFQGTIRLTILDQSEAVIRQNHEEVMDAKPELLAFQRPTIPRNPKGFG
YVTFMHLEALRQGTFIKDDTLLVRCEVTTRFDMGGLRKEAFQPRSTDAGV
NT seq 1593 nt   +upstreamnt  +downstreamnt
atgagtctcttaaactgtgagaacagctgtgggtccagccagttgtccagtgactgctgc
gctgccatggccgcctcctgcagcgctgcagtgaaggatgacagcgtgagtggctctgcc
agtacggggaacctctccagctccttcatggaggagatccagggctacgatgtggagttt
gacccacctctggagagcaagtatgagtgccccatctgcttgatggctttacgggaagca
gtgcaaacaccatgtggccacaggttctgcaaagcctgcatcatcaaatccataagggat
gcaggtcacaagtgcccagttgacaatgaaatactgctggaaaatcaactgtttcctgac
aattttgcaaagcgagagattctttccctgacggtaaagtgcccaaataaaggctgtttg
caaaagatggaactgagacatctcgaggatcatcaagtacattgtgaatttgctctagtg
aattgtccccaatgccaacgtcctttccaaaagtgccaggttaatacacacgttatcgag
gattgtcccaggagacaggtttcttgtgtaaactgtgctgtgtccatggcatatgaagag
aaagaggtccacgatcagagctgccccctggcaaataccatctgtgaatactgtggcacc
gtcctcatcagagaacagatgcctaatcattatgatctagactgcccaacagctccaatc
ccttgtacattcagtgtttttggctgtcatgaaaagatgcagaggaatcacttggcacga
cacttgcaagagaatacccagttgcacatgagactgttggcccaggctgttcataatgtt
aacctcactttgcgtccgtgtgatgcctcctctccatcccggggatatcgtccagaggac
ccaaattatgaggaaactatcaaacagttggagggtcgcctagtaagacaggaccatcaa
atccgggagctgactgccaaaatggaaactcagagcacgtatgtgagcgagctcaaacgg
accatccgaacccttgaggacaaggtttcggaaatggaagcacagcagtgtaatgggatt
tacatttggaagattggcaactttgggatgcacttgaaatcccaagaagaggaaagacct
gttgtcattcatagccctggattctacacaggcagacctggatacaagctgtgcatgcgc
ctgcaccttcagttaccaacggctcaacgctgtgcaaactatatatccctttttgtccac
acaatgcaaggagaatatgacagccacctcccctggcccttccaggggacaatacgcctt
acgattcttgaccagtctgaagcagttataaggcaaaaccacgaagaggtcatggatgct
aaaccagaactgcttgcctttcagcgacccacaatcccacggaaccccaaaggttttggc
tatgtaacatttatgcacctggaagccttaagacagggaaccttcattaaggatgataca
ttattagtgcgctgtgaagtcactacccgctttgacatgggtggccttcggaaggaggct
ttccagccacgaagtactgatgcaggggtgtaa

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