Mastomys coucha (southern multimammate mouse): 116104643
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Entry
116104643 CDS
T07224
Symbol
Kdm2b
Name
(RefSeq) lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
116104643 (Kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcoc03000
]
116104643 (Kdm2b)
04121 Ubiquitin system [BR:
mcoc04121
]
116104643 (Kdm2b)
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116104643 (Kdm2b)
Enzymes [BR:
mcoc01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
116104643 (Kdm2b)
Transcription factors [BR:
mcoc03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
116104643 (Kdm2b)
Ubiquitin system [BR:
mcoc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
116104643 (Kdm2b)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
116104643 (Kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
116104643 (Kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
Cupin_8
JmjC
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
116104643
NCBI-ProteinID:
XP_031247008
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MRPPLQLSPPKVSSRAAAAPACRGALVTQQQNSDAKALTAPGASQAPSGPTSPTAAVPNT
PNPSPPFSPTSLAASSERDRDRQQCLRSGDYDVDASPPTTAENGFLGLCKRICLSRAIDR
QRYDENEDLSDVEEIVSVRGFSLEEKLRSHLYQGDFVHAMEGKDFNYEYVQREALRVPLV
FRDKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQR
DKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNALAEMKYPKVK
KYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIF
LGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDR
TRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRELLLIDAPRKTSVDGFSSDSW
LEMEEESCEQQPQEEEDKEEEGDGADKTPKPPTESPTSPTSTQSEDQDSTGKKPRAPALR
FLKRTLSNESEESIKSASMPIDYPKTPTGSPATEVSTKWTHLTEFELKGLKALVEKLESL
PENKKCVPEGIEDPQALLEGVKNVLKEHVDDDPSLAITGVPVVSWPKKTPKNRVVGRPKG
KLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCI
MRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEG
VVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRR
SECEEAPRRRSDEHPKKVPADGILRRKSDDVHLRRKRKYEKPQELSGRKRASTLQTSPGS
SSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAEDRLSLANKPLR
RFKQEPEDDLPEAPPKSRESDQSRSSSPTAGPSYLSHQDLCVCMRVCRTWNRWCCDKRLW
TRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWI
AVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAG
LDITDASLRLIIRHMPLLSKLQLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVT
DQCLSFFKRCGNIC
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccgccgctgcaactcagccctccaaaagtcagctcccgggcggcggcggcgcct
gcgtgcagaggcgcactcgtgacccaacaacaaaacagcgatgccaaggcgctaacggcg
cccggtgcgtcccaggctccctctggccccacatctcctacggctgcggtccccaacacc
cccaacccgagcccccccttctccccaactagcctagccgcaagctccgagcgcgatcgc
gatcggcaacaatgtttacgttccggggattatgacgtcgacgcctccccccccacaact
gctgaaaatggtttcctaggactttgcaaacggatctgcttaagtcgtgcgattgaccgc
cagagatacgacgagaacgaagacttgtcggacgtggaggaaattgtcagcgtccgtggc
ttcagcctggaggagaagctacgcagccacctataccagggggacttcgtgcatgccatg
gaaggcaaagattttaactatgagtacgtacagagagaagctctcagggttcccctggtt
tttcgggacaaggatggactagggatcaagatgccagaccctgatttcacagtccgagat
gtcaagctcctggtggggagtcgccgtttggtggatgtgatggacgtgaacacccagaag
ggcacggagatgagcatgtcccagttcgtgcgttactatgagacaccagaggcgcagcgg
gacaaactgtacaatgtcatcagcctcgagttcagccacacgaagctggaacatctggtc
aagcgtcccactgtggtggacctggtcgactgggtggacaacatgtggccccagcatcta
aaggaaaagcagacagaagccaccaatgcccttgcggagatgaagtatcccaaagtgaag
aagtactgtctgatgagcgtgaagggctgttttaccgacttccacattgactttggaggc
acctccgtgtggtaccatgttttccgtggtgggaagatcttttggctgatccctccaacc
ctgcacaacttggctctgtatgaggagtgggtgctgtctgggaaacagagcgacatcttt
ctgggagaccgcgtggaacgctgccaaagaattgagctgaagcaaggctacacctttttc
atcccttctggttggatccatgcagtgtacacacccgtggactctctggtgttcggcggg
aacatcctgcatagcttcaacgtgcccatgcagcttcggatctacgagatcgaggacagg
acccgggttcagcccaagttccgttaccccttctactatgagatgtgctggtatgtcttg
gagagatatgtgtactgtgtgacccagcgctcctacctcacccaggaataccagagagaa
ttactgcttattgatgccccaagaaaaaccagtgtagacggcttttcatccgattcctgg
ctggagatggaggaggagtcctgtgagcagcagccccaggaggaggaagacaaggaggag
gaaggggatggtgcagataaaacacccaagccacccaccgagagccccacctcacccacc
agcacccagtcagaagaccaggacagcacagggaagaagccgagagcccctgccttgcga
ttcctcaagaggactttgtccaatgagtcagaggaaagtatcaaatccgcatcgatgccc
atagactaccccaagacacccacgggctccccggccactgaggtttctaccaagtggact
caccttaccgaatttgaactgaagggcttgaaagccctggttgaaaagctagagtctctt
ccggagaataagaagtgtgtccctgagggaatcgaggacccccaggccctcctggaaggt
gtaaagaatgtactgaaggaacacgtggatgacgaccccagcctggccatcaccggagtc
cccgtggtcagttggccaaagaaaactccaaagaaccgggtggtgggtcggcctaagggc
aagttgggcccggcctcagcggtgaagttggctgccaaccgaacaacagcaggagctcgc
aggcgccggacgcgatgccgcaagtgcgaggcctgcctgcggacggagtgtggagagtgc
cacttttgcaaggacatgaagaagtttggaggtcctgggcgcatgaagcagagctgcatc
atgcggcagtgcatcgcgccagtgctgccccacaccgccgtgtgccttgtgtgtggcgaa
gcagggaaggaggacacagtagaggaggaagaaggcaagtttaacctcatgctcatggag
tgctccatctgcaacgagatcatccaccctggatgtcttaagattaaggaatcagagggt
gtggtcaacgatgagcttcccaactgctgggagtgtccgaagtgtaaccatgccggcaag
accgggaaacaaaagcgtggccctggctttaagtatgcctccaacctgcctggctccttg
ctcaaggagcagaagatgaaccgggacaacaaggaagggcaagagcctgccaagcggaga
agtgagtgtgaagaggctccccgtcggaggtcagacgagcaccccaagaaggtgcctgca
gatggcatcctccgccgaaagtctgatgatgtgcacctgaggaggaagcggaaatacgag
aagccccaagagctgagtggacgcaaacgagcctcgacgcttcaaacgtcccccggttcc
tcctctcacctctcgccgaggccccctctaggcagcagtctcagcccttggtggagatcc
agtctcacttacttccagcagcagctaaaacctggcaaagaagataagcttttcaggaaa
aagcggcggtcctggaagaacgctgaggatcgtctatcgctggccaacaagccccttcgg
cgctttaaacaggaaccagaggacgatctgcctgaggcgcctcctaagtcccgggaaagt
gatcagtcccgttccagctcacccactgcagggcccagctacctcagccaccaagacctg
tgtgtgtgcatgcgggtctgcaggacctggaaccgctggtgctgcgataagcggttgtgg
acccgcatcgacctgaaccactgcaagtccattacacccttgatgctgagtggcatcatc
cggcgacaacctgtctcccttgacctcagctggaccaatatctccaagaagcagctgagt
tggctcatcaaccggttgcctgggctccgagacttggtgctgtcaggctgctcatggatt
gctgtctcagccctctgtagctccagttgtccattgctccggaccctggatgtccagtgg
gtagaaggactaaaggatgcccagatgcgggatctcctgtctccacccacagacaacaga
ccaggtcagatggacaatcggagcaagctccggaacattgtagaattgcgcctagctggc
ctggacatcacagatgcctccctgcggctcattattcgccatatgcccctgctctccaag
ctccagctcagttactgtaaccacgtcactgatcagtccatcaacctgctcactgcagtt
ggcaccaccacccgagactctctgacagagatcaacttatcagactgtaataaggtcact
gaccagtgcctgtccttcttcaaacgttgtggaaatatctgt
DBGET
integrated database retrieval system
