Mycoplasmopsis columbina: NCTC10178_00347
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Entry
NCTC10178_00347 CDS
T06777
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcom
Mycoplasmopsis columbina
Pathway
mcom03030
DNA replication
mcom03410
Base excision repair
mcom03420
Nucleotide excision repair
mcom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10178_00347 (ligA)
03410 Base excision repair
NCTC10178_00347 (ligA)
03420 Nucleotide excision repair
NCTC10178_00347 (ligA)
03430 Mismatch repair
NCTC10178_00347 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcom03032
]
NCTC10178_00347 (ligA)
03400 DNA repair and recombination proteins [BR:
mcom03400
]
NCTC10178_00347 (ligA)
Enzymes [BR:
mcom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10178_00347 (ligA)
DNA replication proteins [BR:
mcom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10178_00347 (ligA)
DNA repair and recombination proteins [BR:
mcom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10178_00347 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10178_00347 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10178_00347 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10178_00347 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
BRCT_2
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
TackOD1
Zn_ribbon_9
Motif
Other DBs
NCBI-ProteinID:
VEU76925
LinkDB
All DBs
Position
1:complement(428483..430495)
Genome browser
AA seq
670 aa
AA seq
DB search
MKQNNSQNFSIKEKINRLVEQINQWNKEYFLDNNPSVSDLIYDQTLLELEQLENTYPEFI
SPLSPTQNVGGFIDNKFTKVEHKYPMLSLNKAYSYDEILKFISNLEKIVPLEQIQFSLEP
KIDGLSVALHYQNGYLVQALTRGDGSVGEDITENVKTIISIPKVIDLVDKIEIRGEVFLA
KEKFEAINTDLKNKGEKEFANPRNAASGTLRQLNAQIVKDRELSAYLYEIVEPENYNLTT
QYGVINYLKKLNFPTNELSKVVDVEELEDEIENFAEIKNKLPYDADGLVIKLNNLTYWSK
LGKTAKFPKHSIAFKYEVEQAQSKILAISPTVGRTGKITYVAALEPVELNQTTVRNATLH
NYNFIKSLNIDIGDEVNIIKAGEIIPKIISTVNLKNHTNYEKVLTCPSCNSILVEYEDNV
DQFCTNKLCKEIVINSLYHFASRKSLNIVGLGLNTIKDLYEINLLKTIGDIFELEKHVEI
MKNLPRYAELKVSNLITNINKSKITPFYKVLFAIGIKHLGERAAKLFSQEYNNFGEMLVD
PLLTKMQNIPNIGPKILESVSEYLQDTTNHQLLYKLDKLMTYEIAKKIQISSLLNNLNFV
ITGKLTNSRNYYVDLIEKHGGKILSSVNKKTNYLIAGEDAGSKLTKAQELEVKIINEEEF
NQLLNSLGEK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaaacaattcacaaaatttctcgatcaaagaaaaaatcaatcgccttgtagaa
caaatcaatcagtgaaacaaggaatattttcttgacaataatcccagtgtttcagactta
atttatgatcaaacacttttagaattagagcagttagaaaatacctatccagaatttatt
tcgccgctttccccaacacaaaatgtcggtgggtttattgataacaaatttactaaagtc
gaacataagtatccaatgctttcattaaacaaagcctattcttatgatgaaatactaaaa
tttatttcaaatttagaaaaaatagtgcctttagaacaaattcaatttagtttagaacca
aaaattgatggtttatcagttgcattacattaccaaaatggatatttagttcaagctttg
acacgtggtgatggtagtgtgggcgaagatattactgaaaatgttaaaacaattatttca
attccaaaagttattgatttagttgataaaattgaaattcgaggagaagtttttttagct
aaagaaaaatttgaagcaattaatacagatttaaaaaataaaggtgaaaaagaatttgcc
aatccaagaaatgcagcaagcggaactttaagacaattaaatgcgcaaattgttaaagat
agagaattaagtgcatacttatatgaaatagtagaacctgaaaattacaatttaactact
caatacggagttattaattatttaaaaaaacttaattttccaactaatgaattaagtaaa
gttgttgatgttgaagaattagaagatgaaattgaaaattttgctgaaattaaaaacaaa
ttgccatatgatgctgacggcttagttattaagttaaataatttaacttattgatcaaaa
ttaggtaaaactgcaaaatttccaaaacactcaatagcttttaagtatgaagttgaacaa
gcacaaagcaaaattttggcaattagtcctacagtgggaagaacaggaaaaattacctat
gtggcggctttagaacctgttgaactaaatcaaacaacagtaagaaatgccacattacat
aattacaatttcatcaaaagcttaaatattgatataggtgatgaagttaatattattaaa
gcgggtgaaattattcccaaaattatttcaacagttaatttaaaaaatcatactaactat
gaaaaagttttaacttgtccttcatgtaattcaatcttagttgaatatgaagacaatgtt
gatcagttttgcactaataaactttgtaaagaaatagtgattaattctctttatcatttt
gcttctcgtaagtctttaaatatagttggtttaggattaaacactattaaagatttatat
gaaattaatcttttaaaaactattggagacatttttgaattagaaaaacatgtcgaaatt
atgaaaaacttaccacgttatgcagaattaaaagtaagcaatttaattactaatattaat
aaatctaaaataactcctttttataaagtgctttttgctattggcatcaaacacttaggc
gaaagagcagcgaaattattttcacaagaatataataattttggagaaatgttagtggat
cctttactaactaaaatgcaaaatattcctaatattggacctaaaattttagaatcagtt
tctgaatatttacaagatacaacaaatcaccaactactctataaattagacaaattaatg
acttatgaaattgcaaaaaaaattcaaattagttcacttttaaataatttaaattttgtt
atcactggtaaattaacaaattcaagaaactattatgttgacttaattgaaaaacatggc
ggcaaaattctctcatccgtcaataaaaaaacaaattatttgattgctggtgaagatgct
ggttcaaaactaacaaaagctcaagagttagaagtaaaaataatcaatgaagaagaattt
aaccaattgttaaattcactaggagaaaaataa
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