Mycoplasmopsis columboralis: NCTC10179_00214
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Entry
NCTC10179_00214 CDS
T06766
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcou
Mycoplasmopsis columboralis
Pathway
mcou03030
DNA replication
mcou03410
Base excision repair
mcou03420
Nucleotide excision repair
mcou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10179_00214 (ligA)
03410 Base excision repair
NCTC10179_00214 (ligA)
03420 Nucleotide excision repair
NCTC10179_00214 (ligA)
03430 Mismatch repair
NCTC10179_00214 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcou03032
]
NCTC10179_00214 (ligA)
03400 DNA repair and recombination proteins [BR:
mcou03400
]
NCTC10179_00214 (ligA)
Enzymes [BR:
mcou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10179_00214 (ligA)
DNA replication proteins [BR:
mcou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10179_00214 (ligA)
DNA repair and recombination proteins [BR:
mcou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10179_00214 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10179_00214 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10179_00214 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10179_00214 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
HHH_5
PTSIIA_gutA
Motif
Other DBs
NCBI-ProteinID:
VEU76051
UniProt:
A0A449B624
LinkDB
All DBs
Position
1:264702..266912
Genome browser
AA seq
736 aa
AA seq
DB search
MKNTSKDNLTFIKKRIAELVEQINFWNYEYYDLDFPSVSDTQYDEAYQELVELENLYPAL
IKKNSPTQKIGGTSSNKFVKFTHAKSMLSLNKAYSIEDVVKFDSDVSKVTLTNHSYSLEP
KIDGLSISLHYQGGVFVRAVTRGDGEIGEVVTENIKQIQNIPLTINYNNDLEIRGEVYLS
KHNYNVANEKIKIEHYFNLALKNLKNLNTVLENNLLTSEYKNKIQELLNKITNTANLNLS
FEDLKTFTQEINHLISQNTFVDFSAENSAPKLFANPRNAASGTLRQLDLNVVKQRNLDYF
VYEVVDPNTHGINSQIKALAFLKDLGFVVNEYIYQANSLEDVINKINDFKDIKATLPYDC
DGFVIKVNEMKFWDQLGFTSKFPKYAIAFKYETEEAITKIMDISAEVGRTGKITYLAKLE
PVQLNQTTVSAATLHNYEYVLNMNLNVGDLVKVIKSGEIIPKVIALVQKNTTQVFPKILH
CPSCNSLLQQNQDLVDQFCVNQNCNEKIIRALIHFASRDAMNIMDLGEENIRMFYKEKLL
NNILDIYNLHQKRELLETLPKIGKRKVQKLIASVEKSKQTTLAKALFAIGIKTIGSQVAE
LITQEITQLSDLITLNLDKLTQINTIGNTIVENLRIFVQNPQNQELLRHLDSLLTYEKIT
KTNKLQGLTFVITGTLSQGRDYYKNLIVQNGAKVSSSVSSNTSYVLAGENAGSKLDKAIA
LNVKIINEEQFNELIK
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatacttctaaagataatttaacttttattaaaaaaagaatagctgaattagtt
gaacaaattaacttttgaaactatgaatactatgatttggattttccaagtgttagtgat
acacaatatgatgaggcttatcaagaactggttgagctagaaaatttatatccagcccta
attaaaaagaattcacccactcaaaaaatcggaggaacttcttctaataaatttgttaaa
tttactcacgctaagtcaatgctttctttaaataaagcatactcaattgaggatgtggtt
aaatttgattcggatgtatcaaaggtaactttaacaaatcactcatattcgcttgaacct
aaaattgatggtttatctatttcacttcattatcaaggcggagtttttgtgcgggcagtc
actcgtggagatggagaaattggagaagtagttactgaaaatattaaacaaattcagaat
attcctttaactattaactataacaatgatctggaaattcgcggagaagtatatttgagc
aagcacaattacaatgttgccaatgagaaaatcaagatagaacattattttaatttagcc
ttgaaaaatcttaaaaacttaaatactgttttggaaaataacttattaactagtgaatat
aaaaacaaaattcaagagttgctaaataaaataacaaacacagctaatttaaatttatct
tttgaagatttaaaaacttttactcaagaaattaatcatttaataagccaaaatactttt
gtggatttttctgctgaaaatagtgctccaaagttgtttgccaatccaagaaatgcagct
agcggaacacttagacaacttgacttaaatgtggtcaaacaacgaaatttagattatttt
gtttacgaagtagttgatccaaatacgcatggaattaactcacaaattaaagctttggca
tttttaaaagatttaggatttgtggttaacgaatacatttatcaagccaattcacttgaa
gatgtaataaataaaattaacgattttaaagacattaaagcaacactaccttatgattgc
gatggttttgttattaaagttaatgaaatgaagttttgagatcaattaggttttacctct
aagttcccaaaatatgcaattgcttttaaatacgaaaccgaagaagcaatcactaaaatc
atggatataagcgcagaagttggacgtactggtaaaattacttatttagccaaacttgaa
cctgtgcaattaaatcaaacaacggtctctgctgctactttgcacaattatgaatatgtg
ttaaatatgaatttaaatgttggagacttagttaaggtaattaaatccggcgaaatcatt
cctaaagtaattgcgttagtacaaaaaaataccactcaagtttttccgaaaattttacat
tgtccttcatgtaatagcttgttgcaacaaaatcaagatttagttgaccaattttgtgta
aatcaaaattgcaacgaaaaaatcattcgggcattaattcattttgcttctcgtgatgct
atgaacattatggacttaggtgaagaaaatattcgaatgttttataaggaaaaattgctt
aataacattttagatatttacaatttacatcaaaaaagagaacttttagaaactcttcca
aaaattggaaaacgtaaagttcaaaaattaattgctagtgttgaaaagtcaaaacaaaca
actttagcaaaagcgctttttgcaatcggaattaaaacaatcggatctcaagttgctgaa
ttaattactcaagaaattacacagctttcagatttaattactttgaatttagataaatta
actcaaataaatacaatcggaaatactattgtagaaaacttacgcatctttgtgcaaaac
ccacaaaatcaggagttattaagacatttagattctttattaacttacgaaaaaattacc
aaaaccaacaaacttcaaggattaacttttgttataactggaacattatctcaagggcga
gattattataaaaatttaattgttcaaaacggagctaaagtttcttcttcagtaagttcc
aatacttcatacgtactggccggagaaaacgctggaagtaaattagataaagcaattgct
ctaaatgttaaaattattaatgaagagcaatttaacgaattaataaaataa
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