Mycoplasmopsis californica ST-6: MCFN_01485
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Entry
MCFN_01485 CDS
T03247
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcr
Mycoplasmopsis californica ST-6
Pathway
mcr03030
DNA replication
mcr03410
Base excision repair
mcr03420
Nucleotide excision repair
mcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCFN_01485 (ligA)
03410 Base excision repair
MCFN_01485 (ligA)
03420 Nucleotide excision repair
MCFN_01485 (ligA)
03430 Mismatch repair
MCFN_01485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcr03032
]
MCFN_01485 (ligA)
03400 DNA repair and recombination proteins [BR:
mcr03400
]
MCFN_01485 (ligA)
Enzymes [BR:
mcr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCFN_01485 (ligA)
DNA replication proteins [BR:
mcr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCFN_01485 (ligA)
DNA repair and recombination proteins [BR:
mcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCFN_01485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCFN_01485 (ligA)
MMR (mismatch excision repair)
DNA ligase
MCFN_01485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCFN_01485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
HHH_5
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AIA29441
UniProt:
A0A059XVT0
LinkDB
All DBs
Position
349870..351858
Genome browser
AA seq
662 aa
AA seq
DB search
MKQKISELTNLINQWNYEYFILNEPTVSDLEYDKALLELERLEKEFPQFIHPNSPTKKVG
ANYNAYLSKFTKVKHMQPMLSLGKAYSYDDVEKFISNIEQVVPTEEIQFSLEPKIDGLSI
ALHYQNGYLAKALTRGDGVEGEDVTDNVFQIKDIPHIIDYSNDIEVRGEVFMSKNQFNTL
KTQMSQEGKKIPSNPRNAASGTLRQKDSEVVKQRSLSCYIYEIVEPLKHDLNTQKEVLAF
LKKINIPINPYMQIVDSEELPDKIEDFAEIKNKFNYDVDGLVIKLNNLKYWERLGKTAKF
PKHSVAFKYDVEQASSIIKNIAVSVGRTGKVTYIADIDPVELNQTLVTRATLHNYNFIEE
LKINVGDEIAIIKAGEIIPKIIALTHKNTENTFKKVLSCPSCLSQLVEYEGIVDQFCTNQ
NCEEKQVNKIYHFASRKAMNIVGMGLELVRSLYRAKIIEKIEDLYSLETKIQELSNIKLK
GNVNFGLLRAQKLLINIKKSKNVSFAKVLFALGLNHLGSRAAILIAQKYSSFADLINDRE
LDLLKNIDNIGPKTVNSILDYMSDENNVQLMKFLDINLNYINANATKSNIFAGKTFVITG
TLSYAREHFVAIIEANGGNVSSSVSKKTSYLLAGEHAGSKLDKAKSLNIQILNENEFNNL
LK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaaaaattagtgaattgactaacttaataaatcagtgaaattatgagtatttc
atacttaatgaaccaacagtgagtgacttagaatatgataaagcactgcttgaattagaa
agactagaaaaagagtttcctcagtttatccacccaaattcaccaaccaaaaaggttgga
gcaaactataatgcttatctttcaaaattcaccaaagttaaacacatgcaaccaatgctt
tcgcttggcaaagcttatagttatgatgatgttgaaaaatttatctccaacattgagcaa
gttgtaccgactgaagaaattcaatttagtttagaacctaaaatcgatggactttcaatc
gccttgcactatcaaaatggttatttagcaaaagcgcttactcgtggagatggagttgaa
ggagaagatgttactgacaatgtttttcaaattaaagacatacctcatataatcgattac
agcaacgatatagaagtgcgtggcgaagtgtttatgagtaaaaaccaattcaacacgtta
aaaacacaaatgtcacaggaaggtaaaaaaatcccttctaatccacgcaacgcggctagc
ggcacactacgtcaaaaagattcggaagttgtaaaacaacgtagcttaagctgttatatt
tatgaaatagtggagccacttaaacatgatttaaatactcaaaaagaagttcttgctttt
ttgaaaaaaataaatatcccaataaacccatatatgcaaattgtcgattcagaggaattg
cctgataaaattgaggattttgctgaaataaagaataaatttaattatgatgttgatgga
ttagtaattaagttaaataacttaaaatattgagaaagattgggtaaaactgctaaattc
ccaaaacattcagtcgcttttaaatatgatgttgagcaagcaagtagtattataaaaaat
attgcagtttctgttgggcgcactgggaaagtcacttacattgccgatattgatccggtt
gaattaaaccaaacgctagtaaccagagcaaccttacacaactacaattttattgaggaa
cttaaaatcaatgtaggagatgagatagcaatcattaaagccggtgaaataattcctaaa
attattgctttaacacacaaaaacactgaaaatacattcaaaaaagtattatcttgtccc
tcgtgtttaagccaattagttgaatatgaaggaatagtggaccagttttgcacaaaccaa
aattgtgaagaaaaacaagtaaataaaatttatcattttgcgtcacgtaaagcaatgaat
attgttggtatgggtcttgaacttgttcggagcttatatcgtgcaaaaattattgagaaa
attgaagatttatacagcttagaaacaaaaattcaagagttaagcaacattaagttaaaa
ggaaatgttaattttggcttgctaagagctcagaaattattaataaacattaagaaaagt
aaaaatgtatcttttgcgaaagttctttttgcattaggactaaatcatttaggatcccgt
gctgcaattttaattgcacaaaaatactcttcattcgctgatttgattaatgatcgtgag
ttggatttattgaaaaatattgataatataggaccaaaaacagttaacagtatattagac
tatatgagtgatgaaaataatgttcaattaatgaagtttttagacattaatttaaattat
ataaatgcaaatgcaacaaaatcaaatatttttgctggtaaaacgtttgtaattactggg
acactatcttatgcacgtgagcattttgttgccatcattgaagcgaacgggggcaatgtt
agttcaagcgtttctaaaaaaacaagctatttattagcgggcgaacacgccggtagcaaa
ttagataaggctaaaagtttaaatattcaaattttgaatgaaaatgaatttaataattta
ttaaaataa
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