Micromonospora craniellae: ID554_05570
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Entry
ID554_05570 CDS
T06957
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcra
Micromonospora craniellae
Pathway
mcra03030
DNA replication
mcra03410
Base excision repair
mcra03420
Nucleotide excision repair
mcra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ID554_05570 (ligA)
03410 Base excision repair
ID554_05570 (ligA)
03420 Nucleotide excision repair
ID554_05570 (ligA)
03430 Mismatch repair
ID554_05570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcra03032
]
ID554_05570 (ligA)
03400 DNA repair and recombination proteins [BR:
mcra03400
]
ID554_05570 (ligA)
Enzymes [BR:
mcra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ID554_05570 (ligA)
DNA replication proteins [BR:
mcra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ID554_05570 (ligA)
DNA repair and recombination proteins [BR:
mcra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ID554_05570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ID554_05570 (ligA)
MMR (mismatch excision repair)
DNA ligase
ID554_05570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ID554_05570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
HHH_8
PTCB-BRCT
Auto_anti-p27
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
QOC93162
LinkDB
All DBs
Position
complement(1216713..1218848)
Genome browser
AA seq
711 aa
AA seq
DB search
MSEQAIDQQVSAAQEAAAGAEPTPQARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQ
LRELEALEEEFPALRTPDSPTQRVGGTFSTDFAPVAHAERMMSLDNAFADEELAAWAERV
ERDAGGPVPYLCELKVDGLAINLTYESGRLVRAATRGDGRIGEDVTANVRSIRDVPTRLT
DSAEFGPVSELIEVRGEIYFPVEAFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITA
SRPLRLVVHGIGARRGFQPATQSESYSALRAWGLPTSDRWRVVSDLAGVRDFIAHYAAHR
HDVEHEIDGVVVKVDPVPIQGRLGSTSRAPRWAIAFKYPPEEVNTSLLDIEVEVGRTGRV
TPRALLQPVKVAGSTVAYATLHNAREVERKGVLIGDTVVIRKAGDVIPEVLGPVVELRPP
DARAFVMPTTCPACGTPLAPAKEGDVDIRCPNSRSCPAQLRERVYHLAGRKVFDIEALGY
KSAAALLDAQVITDEGDLFSLDAEQLARSPFFVNKDGSLGSNAVKLLDNLAVAKERELWR
VLVALSIRHVGPTAAQALARHFRSIEAIDAASEEELSSVDGVGPTIAASIREWLAVDWHR
EVIRKWADAGVRMAEEAQGEGPRPLEGVTVVVTGTLAGYSRDQAAEAIQSRGGKVSGSVS
KKTGFVVVGDNPGSKADKAAGLKVPILDEEGFRVLLDSGADAARAVARVEE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgagcaagccatcgaccagcaggtcagcgcggcgcaggaggcggcggccggcgcc
gagcccaccccgcaggcgcgggaacggcacgccacgctgagccaggagctgaccgagcac
cagtaccgctactacgtgctcgacgcgccgaccgtctcggacgccgagttcgaccggcaa
ctgcgggagctggaagcgttggaggaggagtttccggcgctgcgcaccccggattcgccg
acccaacgtgtcggcggcaccttctccaccgacttcgccccggtcgcgcacgcggaacgg
atgatgtcgctggacaacgcgttcgccgacgaggagctggcggcgtgggccgagcgggtc
gagcgggacgcgggcggcccggtgccctacctgtgcgagctgaaggtcgacgggctggcg
atcaacctcacctacgagtcgggtcggctggtgcgggcggcgacccggggcgacggccgc
atcggcgaggacgtcaccgccaacgtgcgcagcatccgggacgtgcccacccggctgacc
gactcggcggagttcgggccggtctccgagctgatcgaggtacgcggggagatctacttc
ccggtcgaggccttcgccgacctgaacgcgggcctggtcgagcagggcaaggcgccgttc
gccaacccgcgtaacgccgccgccggcagcctgcggcagaaggacccgcggatcaccgcg
tcccgaccgctgcgcctggtggtgcacggcatcggtgcccggcgcggcttccagccggcc
acccagtccgagtcgtactcggcgttgcgggcctgggggctgcccaccagcgaccgctgg
cgggtggtgtccgacctggccggcgtccgggacttcatcgcgcactacgccgcgcaccgg
cacgacgtggaacacgagatcgacggcgtggtggtcaaggtcgacccggtgccgatccag
gggcggctcggctcgaccagccgggcaccccgctgggcgatcgccttcaagtacccaccc
gaggaggtcaacaccagcctgctcgacatcgaggtcgaggtgggacggaccggtcgggtc
acgccccgggcgctgctccagccggtgaaggtggccggctccaccgtcgcgtacgcgacc
ctgcacaacgcccgcgaggtggagcgcaagggggtgctgatcggcgacacggtggtgatc
cgtaaggccggcgacgtgatccccgaggtgctcggcccggtggtcgagctgcgcccgccc
gacgcccgggcgttcgtcatgcccaccacctgcccggcctgcggcaccccgctcgccccg
gcgaaggagggcgacgtcgacatccgctgccccaactcgcgcagttgcccggcgcagttg
cgcgagcgggtctaccacctggccgggcgcaaggtgttcgacatcgaggcgctcggctac
aagagcgccgccgcgctgctcgacgcgcaggtgatcaccgacgagggtgacctgttctcg
ctcgacgccgagcagttggcccgctcgccgttcttcgtcaacaaggacggcagcctcggc
agcaacgccgtcaagctgctcgacaacctcgccgtcgccaaggaacgcgagctgtggcgg
gtgctggtggcgctctccatccggcacgtcgggccgaccgccgcgcaggcgctcgcccgg
cacttccggtcgatcgaggcgatcgatgccgcgtcggaggaggaactgtcctccgtcgac
ggtgtcgggccgaccatcgccgcgagcatccgggagtggctcgccgtcgactggcaccgc
gaggtgatccgcaagtgggccgacgcgggtgtccggatggccgaggaggcgcagggggag
ggcccacgaccgctggagggggtgaccgtggtggtcaccggcacgctggccggctactcg
cgagaccaggccgccgaggcgatccagtcccggggcggcaaggtcagcggctcggtgtcg
aagaagaccggtttcgtggtggtcggcgacaatccaggatccaaggcggacaaggcggcc
ggcctgaaggtgccgatcctcgacgaggagggcttccgggtgctgctcgactccggggcg
gacgcggcccgcgcggtggcccgcgtcgaggagtaa
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