Mycolicibacterium crocinum: MI149_09430
Help
Entry
MI149_09430 CDS
T08227
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcro
Mycolicibacterium crocinum
Pathway
mcro03030
DNA replication
mcro03410
Base excision repair
mcro03420
Nucleotide excision repair
mcro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MI149_09430 (ligA)
03410 Base excision repair
MI149_09430 (ligA)
03420 Nucleotide excision repair
MI149_09430 (ligA)
03430 Mismatch repair
MI149_09430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcro03032
]
MI149_09430 (ligA)
03400 DNA repair and recombination proteins [BR:
mcro03400
]
MI149_09430 (ligA)
Enzymes [BR:
mcro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MI149_09430 (ligA)
DNA replication proteins [BR:
mcro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MI149_09430 (ligA)
DNA repair and recombination proteins [BR:
mcro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MI149_09430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MI149_09430 (ligA)
MMR (mismatch excision repair)
DNA ligase
MI149_09430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MI149_09430 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
SLATT_1
Zn_ribbon_TFIIB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ULN43262
UniProt:
A0ABY3TWC6
LinkDB
All DBs
Position
2137252..2139360
Genome browser
AA seq
702 aa
AA seq
DB search
MAPQTSDPEADPIDPDVRRRWQDLAEEVREHQFRYYIKDAPIVSDAEFDKLFNELLALEE
RFPELRVPDSPTQLVGGAGFATDFAEAAHLERMLSLDDVFNTEELAAWSNRVEAEIGKAP
QYLCELKIDGVAIALVYRNGRLERAATRGDGRVGEDVTNNARTIDDIPETLTGTDEYPVP
ALLEVRGEVFFRVADFENLNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLRMICH
GLGRTEGFSPASLHDTYFALKAWGLPVSDHTTRAAGLAAVEEKIVYWGERRHEIEHEIDG
VVVKVDDFAQQRRLGATSRAPRWACAYKYPPEEAQTKLLDIQVNVGRTGRVTPFAMMTPV
KIAGSTVGMATLHNGSEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGSEREFVMPT
HCPECGTPLAPAKEGDVDIRCPNARSCPAQLRERVFHLAGRGGLDIEGLGYEAATALLAA
KVITDEGDLFSLTSADLLTSDFFTTKDGALSANGARFLVNLQQAKDRPLWRILVALSIRH
VGPTAARALAVAFGSLDAIMAASEEQLADVEGVGPTIAAALVEWFAVDWHRAIIDKWRAA
GMRMEDVRDSSITPTLQGLSIVVTGSLPNFSRDEAKEAIISRGGKAVGSVSKKTSYVVAG
DSPGSKYDKAVELGVPILDEDGFRTLLEQGPPPADADSDADE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggctccacagacgtccgatcccgaggctgatcccatcgatccggatgtgcggcggcgt
tggcaggatcttgccgaagaggtgcgtgagcatcagttccgctactacatcaaggacgcg
ccgatcgtgtccgacgcggagttcgacaagctgttcaacgaactcctcgccctcgaggag
cgcttccccgagcttcgggttcccgactcgcccacccaattggtcggcggtgccgggttc
gcgaccgacttcgccgaggccgcccacctggaacgcatgctgagcctcgacgacgtgttc
aacaccgaggagctggcggcctggtccaaccgggtggaagccgagatcggcaaggccccg
cagtacctgtgcgagctgaagatcgacggtgtcgcgatcgccctggtgtaccgcaacggc
cggctggagcgtgccgccacccgcggtgacggccgggtcggcgaggacgtcaccaacaac
gcccgcaccatcgacgacatccccgaaaccctcaccgggacagacgaataccccgtgcct
gcgctgctggaggtgcgcggtgaggtgttcttccgggtggctgacttcgagaacctcaac
gccagcctggtcgaggagggcaaggcgccgttcgccaacccgcgcaacagcgcggccggc
tctctgcggcagaagaatccggccgtcaccgcgcggcggcggctgcggatgatctgccac
ggactcggccgtaccgaaggcttcagcccggcctccctgcacgacacctacttcgccctg
aaggcctggggtctgccggtctccgaccacaccactcgggcggcggggctcgccgccgtc
gaggagaagattgtctactggggcgagcgccgccacgagatcgagcacgaaatcgacggt
gtggtggtcaaagtcgacgacttcgcccagcagcgccgtctcggcgccacctcccgcgcc
ccgcgctgggcgtgtgcgtacaagtacccgccggaggaagcccagaccaagctgctcgac
attcaggtcaacgtcggccgcaccggccgcgtcaccccgttcgcgatgatgaccccggtc
aaaatcgccgggtcgaccgtcggcatggccaccctgcacaacgggtcagaggtcaagcgc
aagggcgtcctgatcggcgacacggtgatgatccgcaaggccggtgacgtcatccccgag
gtcctgggtcccgtcgtcgacctgcgcgacggctccgagcgcgaattcgtgatgcccacc
cactgcccggagtgcggcacccccttggctcccgcgaaggagggtgacgtcgacatccgc
tgccccaacgctcggtcgtgtcccgcacaactgcgtgagcgggtgtttcacctggccggg
cgcggcgggctggacatcgaagggctgggctatgaggcggcgacggcgctgctggcggcc
aaggtcatcaccgacgagggcgacctgttcagcctcaccagcgccgacctgctgacgtcg
gatttcttcacgacgaaggacggcgcgctgtcggccaacggcgcccggttcctggtcaat
ctgcaacaggccaaggaccggccgctgtggcggatcctggtggcgttgtccatccggcac
gtggggccgaccgcggcgcgcgcgctggcggtggcgttcggcagcctcgacgccatcatg
gcggcgtccgaggaacagctcgccgacgtcgagggtgtcggaccgacgatcgcggcggcc
ctggtcgagtggttcgccgtcgactggcatcgcgcgatcatcgacaagtggcgggccgcc
ggcatgcggatggaagacgttcgcgactcctcgataacgcctacgctgcaagggctttcg
atcgtggtcaccgggtcgctgccgaacttctcccgcgatgaggccaaggaggcgatcatc
agccgcggcggtaaggcggtcggctcggtgtcgaagaagacgtcctacgtcgtggcggga
gattcaccgggttcgaagtacgacaaggccgtcgagctgggtgtgccgatcctcgacgag
gacgggtttcgcaccctgctggaacagggcccgccgcccgccgacgccgattccgacgcc
gacgagtga
DBGET
integrated database retrieval system
