Mycobacterium canettii CIPT 140070008: BN43_40728
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Entry
BN43_40728 CDS
T02420
Symbol
ligA
Name
(GenBank) Putative DNA ligase [NAD dependent] LigA (polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcv
Mycobacterium canettii CIPT 140070008
Pathway
mcv03030
DNA replication
mcv03410
Base excision repair
mcv03420
Nucleotide excision repair
mcv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN43_40728 (ligA)
03410 Base excision repair
BN43_40728 (ligA)
03420 Nucleotide excision repair
BN43_40728 (ligA)
03430 Mismatch repair
BN43_40728 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcv03032
]
BN43_40728 (ligA)
03400 DNA repair and recombination proteins [BR:
mcv03400
]
BN43_40728 (ligA)
Enzymes [BR:
mcv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN43_40728 (ligA)
DNA replication proteins [BR:
mcv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN43_40728 (ligA)
DNA repair and recombination proteins [BR:
mcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN43_40728 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN43_40728 (ligA)
MMR (mismatch excision repair)
DNA ligase
BN43_40728 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN43_40728 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CCK57064
LinkDB
All DBs
Position
complement(3412524..3414599)
Genome browser
AA seq
691 aa
AA seq
DB search
MSSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPE
LRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTVGELAAWAGRIHAEVGDAAHYLC
ELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLE
VRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH
VEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVK
VDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAG
STVGQATLHNASEIRRKGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPE
CGSPLAPEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAKVIA
DEGDLFTLTEQDLLRTDLFRTKAGELSANGKRLLANLDKAKAAPLWRVLVALSIRHVGPT
AARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRM
ADERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPG
SKYDKAVELGVPILDEDGFRRLLAGGPASRT
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccccagacgccgatcagaccgctcccgaggtgttgcggcagtggcaggcactg
gccgaggaggtgcgtgagcaccagttccgttattacgtgcgggacgcgccgatcatcagc
gacgcggaattcgacgagctgctgcgccgtctggaagccctcgaggagcagcatcccgag
ctgcgcacgcccgattcgccgacccagctggtcggcggtgccggcttcgccacggatttc
gagcccgtcgaccatctcgaacgaatgctcagcctcgacaacgcgttcaccgtcggcgaa
ctcgccgcctgggccggccgcatccatgccgaggtcggggacgccgcacattacctgtgt
gagctcaagatcgacggcgtcgcgctgtctttggtctaccgcgagggacggctgacccgg
gcctccacccgcggcgacgggcgcaccggcgaggacgtcaccctgaacgcccggaccatc
gccgacgttcccgaacggctcacccccggcgacgactacccggtgcccgaggtcctcgag
gtccgcggcgaggtcttcttccggctggacgacttccaggcgctcaacgccagcctcgtc
gaggagggcaaggcgccgttcgccaacccccgcaacagcgcggcgggatcgctgcgccag
aaagacccggcggtcaccgcgcgccgccggctgcggatgatctgtcacgggctgggccac
gtggagggctttcgcccggccaccctgcatcaggcatacctggcgttgcgggcatgggga
ctgccggtttccgaacacaccaccctggcaaccgacctggccggtgtgcgcgagcgcatc
gactactggggtgagcaccggcacgaggtggaccacgaaatcgacggcgtggtggtcaaa
gtcgacgaggtggcgttgcagcgcaggctgggttccacgtcgcgtgcgccgcgctgggcc
atcgcctacaagtacccgcccgaggaagcgcagaccaagctgctcgacatccgggtgaac
gtcggccgcaccgggcggatcacgccgtttgcgttcatgacgccggtgaaggtggccggg
tcgacggtgggacaggccaccctgcacaacgcctcggagatcaggcgcaagggcgtgctg
atcggcgacaccgtggtgatccgcaaggccggcgacgtgatccccgaggtgctgggaccc
gtcgtcgaactgcgcgatggctccgaacgcgaattcatcatgcccaccacgtgtcccgag
tgtggttcgccgttggcgccggagaaggagggcgacgccgacatccgttgccccaatgcc
cgcggctgcccggggcaactgcgggagcgggttttccacgtcgccagccgcaacggccta
gacatcgaggtgctgggttacgaggcgggtgtggcgctcttgcaggcgaaggtgatcgcc
gacgagggcgacttgttcacgctgaccgagcaggacttgctgcgcaccgacctgttccgc
accaaggcgggcgaattgtcggccaacggcaaacggctgctggccaacctcgataaggcc
aaggcggcaccgctgtggcgggtgctggtggcgttgtccatccgccatgtcgggccgacg
gcggcccgcgccctggccaccgagttcggcagccttgacgccatcgccgcagcgtccacc
gaccagctggctgcggtcgagggggtggggccgaccattgccgccgcggtcaccgagtgg
ttcgccgtcgactggcaccgcgagatcgtcgacaagtggcgggccgccggggtgcggatg
gccgacgagcgcgacgagagcgtgccacgcacgctggccgggctgaccatcgtggtcacc
ggctcgctgaccggtttctcccgcgacgacgccaaggaggcgatcgtggcccgcggcggc
aaggccgccggctcggtgtcgaagaagaccaactatgtcgtcgccggcgactcgccggga
tccaaatacgacaaggcggtggagttgggggtgccgattctggacgaggatgggttccgg
agactgctggccggcggacccgcgtcacgaacgtaa
DBGET
integrated database retrieval system
