Mycobacterium canettii CIPT 140070010: BN42_41022
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Entry
BN42_41022 CDS
T02421
Symbol
ligA
Name
(GenBank) Putative DNA ligase [NAD dependent] LigA (polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcx
Mycobacterium canettii CIPT 140070010
Pathway
mcx03030
DNA replication
mcx03410
Base excision repair
mcx03420
Nucleotide excision repair
mcx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN42_41022 (ligA)
03410 Base excision repair
BN42_41022 (ligA)
03420 Nucleotide excision repair
BN42_41022 (ligA)
03430 Mismatch repair
BN42_41022 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcx03032
]
BN42_41022 (ligA)
03400 DNA repair and recombination proteins [BR:
mcx03400
]
BN42_41022 (ligA)
Enzymes [BR:
mcx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN42_41022 (ligA)
DNA replication proteins [BR:
mcx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN42_41022 (ligA)
DNA repair and recombination proteins [BR:
mcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN42_41022 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN42_41022 (ligA)
MMR (mismatch excision repair)
DNA ligase
BN42_41022 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN42_41022 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CCK61122
LinkDB
All DBs
Position
complement(3499871..3501946)
Genome browser
AA seq
691 aa
AA seq
DB search
MSSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPE
LRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLC
ELKIDGVALSLIYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTASDDYPVPEVLE
VRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH
VEGFRPATLHQAYLALRAWGLPVSEHTTLVNDLGGVRERIDYWGEHRHEVDHEIDGVVVK
VDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAG
STVGQATLHNASEIKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSQREFVMPTTCPE
CGSPVAPEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAKAIA
DEGDLFALTERDLLRTDLFRTKAGELSANGKRLLANLDKAKAAPLWRVLVALSIRHVGPT
AARALATEFGSLAAIAAASTEQLAAVEGVGPTIAAAVTEWFAVDWHGEIVDKWRAAGVRM
ADERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTDYVVVGDSPG
SKYDKAVELGVPILDEDGFRRLLADGPASRT
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccccagacgccgatcagaccgctcccgaggtgttgcggcagtggcaggcactg
gccgaggaggtgcgtgagcaccagttccgttattacgtgcgggacgcgccgatcatcagc
gacgcggaattcgacgagctgctgcgccgtctggaagccctcgaggagcagcatcccgag
ctgcgcacgcccgattcgccgacccagctggtcggcggtgccggcttcgccacggatttc
gagcccgtcgaccatctcgaacgaatgctcagcctcgacaacgcgttcaccgccgacgaa
ctcgccgcctgggccggccgcatccacgccgaggtcggggacgccgcgcattacctgtgt
gagctcaagatcgacggtgtcgcgctgtctttgatctaccgcgagggtcggctgacccgg
gcctccacccgcggcgacggccgcaccggcgaggacgtcaccctgaacgcccggaccatc
gccgacgttcccgaacggctcaccgccagcgacgactacccggtgcccgaggtcctcgag
gtccgcggcgaggtctttttccggctggacgacttccaggcgctcaacgccagcctcgtc
gaggagggcaaggcgccgttcgccaacccccgcaacagcgccgcgggatcgctgcgccag
aaagacccggcggtcaccgcgcgccgccggctgcggatgatctgccacgggctgggccac
gtggagggctttcgcccggccaccctgcatcaggcatacctggcgttgcgggcgtgggga
ctgccggtttccgaacacaccaccctggtgaacgacctgggcggtgtgcgcgagcgcatc
gactactggggcgagcaccgccacgaggtagaccacgaaatcgacggcgtggtggtcaaa
gtcgacgaggtggcgttgcagcgcaggctgggttccacgtcgcgggcgccgcgctgggcc
atcgcctacaagtacccgcccgaggaagcgcagaccaagctgctagacatccgggtgaac
gtcggccgcaccgggcggatcacgccgtttgcgttcatgacgccggtgaaggtggccggg
tcgacggtggggcaggccaccctgcacaacgcctcggagatcaagcgcaagggcgtgctg
atcggcgacaccgtggtgatccgcaaggccggcgacgtgatccccgaggtgctgggaccc
gtcgtcgacctgcgcgatgggtcgcagcgcgaattcgtcatgcccaccacgtgtccggag
tgcggctcgcctgtggcgccggagaaggagggcgacgccgacatccgctgccccaacgcc
cgcggctgcccggggcaactgcgggagcgggtcttccacgtcgccagccgcaacggcctg
gacatcgaggtgctcggttacgaggcgggtgtggcgctcttgcaggcgaaggcgatcgcc
gacgagggcgacctgttcgcgctgaccgagcgggacttgctgcgcaccgacctgttccgc
accaaggcgggcgaattgtcggccaacggcaaacggctgctggccaacctcgacaaggcc
aaggccgcaccgctgtggcgggtgctggtggcgctgtcgattcgccatgtcgggccgacg
gcggcccgcgccctggccaccgagttcggcagtttggccgccatcgccgcggcgtccacc
gagcagctggccgccgtcgagggggtggggccgaccattgccgccgcggtcaccgagtgg
ttcgccgtcgactggcacggcgagatcgtcgacaagtggcgggccgccggggtgcggatg
gccgacgagcgtgacgagagcgtgcctcgtactctggctgggctgaccatcgtggtcacc
ggctcgctgaccggcttttcccgcgacgacgccaaggaggcgatcgtggcccgtggtggc
aaggccgccggctcggtgtcgaagaagaccgactatgtcgtcgtcggcgactcgccggga
tccaaatacgacaaggcggtggagttgggggtgccgattctggacgaggacgggttccgg
agactgctggccgacggacccgcgtcacgaacgtaa
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integrated database retrieval system
