Mycoplasmopsis cynos: MCYN_0008
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Entry
MCYN_0008 CDS
T02424
Symbol
MCYN0008
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcy
Mycoplasmopsis cynos
Pathway
mcy03030
DNA replication
mcy03410
Base excision repair
mcy03420
Nucleotide excision repair
mcy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCYN_0008 (MCYN0008)
03410 Base excision repair
MCYN_0008 (MCYN0008)
03420 Nucleotide excision repair
MCYN_0008 (MCYN0008)
03430 Mismatch repair
MCYN_0008 (MCYN0008)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcy03032
]
MCYN_0008 (MCYN0008)
03400 DNA repair and recombination proteins [BR:
mcy03400
]
MCYN_0008 (MCYN0008)
Enzymes [BR:
mcy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCYN_0008 (MCYN0008)
DNA replication proteins [BR:
mcy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCYN_0008 (MCYN0008)
DNA repair and recombination proteins [BR:
mcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCYN_0008 (MCYN0008)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCYN_0008 (MCYN0008)
MMR (mismatch excision repair)
DNA ligase
MCYN_0008 (MCYN0008)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCYN_0008 (MCYN0008)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
AAA_14
TackOD1
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
CCP23740
UniProt:
L0RW08
LinkDB
All DBs
Position
complement(6949..8940)
Genome browser
AA seq
663 aa
AA seq
DB search
MNINQNIKKKIDELVDKINKWNHEYYDLSEPSISDNKYDIELRKLEILEQQYPEFISINS
PTKKVGGNIVKGFKEFKHNSPMLSLAKAYSKQDLEKFYNDVIKKISKKVEFSLEPKIDGA
SISLHYEEGILVRAVTRGTGQIGNDITNNIKEIADVPKIINYKKTLEVRGEVYLPKSQFV
LINQKRVLNNEKPFANPRNAASGTIQQLDNSTIKERNLSTIIYNIVDPLEHNIQTQTDAI
HKLKTLGFNTSPYIEKSSLFEEIWNYVFKFKELKKSFDFECDGFVLKVNKFDLWNNFGLT
AKFPKYAIAYKFETEEAKSIIKNIIPTVGRTGKISYIAEIEPVTLAQTTVRKATLHNSEF
IKELNINIGDEIILIKSGEIIPKITGLSKKRSINYYEKIKHCPSCDSILVNLDNLVDQFC
LNANCNEKKIRSIIHFTSKKALDINTLGEKNIEIFYKYGFISDLISIFKLKNFKNEILKL
RNFQETKINKILDGIEKAKNTQFLNVLYGIGIKHIGLSVAEIIAEKISNFKELININFEE
LEKVNTIGPSIIYELKEYIKQNKDLLIKFDEIFKYQTHSPKKSHTLNNLSFVITGKLNYS
RSFYEQKIKENNGRLLKSVNKNLDYLITNEKNTNSSKMIAALKYDIKIINEEQFLQLIKK
DEK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaaccaaaatatcaaaaaaaagattgatgaattagttgataaaatcaataag
tgaaatcatgaatattatgatctttctgaaccttctatatcagataataaatatgatata
gaattaagaaaattagaaattcttgagcaacaatatccagaatttatttcaattaattct
ccaacaaaaaaagttggcggtaatattgttaaaggctttaaagagtttaaacataatagt
cctatgctttctttggcaaaagcatactcaaaacaagatttagaaaaattttataatgat
gtaattaaaaaaataagtaaaaaagttgagtttagcttggaaccaaaaattgatggtgca
tcaatttctttacattatgaagaaggaattttggttagagctgtaactcgaggaactgga
caaatcggaaatgatatcactaataacattaaagaaatagctgatgttccaaaaataatt
aattataaaaaaacattagaagttaggggtgaagtttatctaccaaaatctcaatttgtt
ctaatcaatcaaaaaagagttttaaataatgaaaaaccttttgcaaatccaagaaatgca
gcttctggaacaattcaacaattagataattcaacaattaaagaaagaaatttatcaacc
attatttataatattgttgatccgttagaacataatatacagacacaaacggacgctata
cataaattaaaaaccttagggtttaatactagcccctacatagagaaaagcagtctcttt
gaggagatttgaaactatgtttttaagtttaaagaattaaaaaaatcatttgattttgaa
tgtgatggttttgttttaaaggtaaataaatttgatttatgaaacaattttggtttaact
gcaaaattcccaaaatatgcaattgcttacaaattcgaaacagaagaagcaaaatcaatt
attaaaaatataattccaacagttggaagaacaggaaaaattagttatatcgcagaaatt
gagcctgttacattagctcaaaccactgtcagaaaagcaactcttcataatagtgaattt
ataaaagaattaaatataaatattggggatgaaataatcttaataaaatcaggcgaaata
attcctaaaattacaggattaagcaaaaagcgctcgataaattattatgaaaaaattaaa
cattgcccaagttgtgattctatattagttaatcttgataacttagttgatcaattttgt
ttaaatgcaaattgtaatgaaaaaaagattcgttcaataatacacttcacaagcaaaaaa
gcactcgacatcaatactttaggcgaaaaaaatatcgaaatattttataaatacggtttt
attagtgatttaatttctattttcaaattaaaaaattttaaaaatgagattttaaaacta
agaaattttcaagaaactaaaataaataaaatactagatggtatcgaaaaagcgaaaaac
acacaatttttaaatgttctatatggaattggtataaaacacatcgggctttctgttgct
gaaattattgcagaaaaaattagtaattttaaggaattaataaatataaattttgaagaa
ttagaaaaagtaaacactattggcccttcaattatttatgaattaaaagagtatataaaa
cagaataaagacttattaattaaatttgatgaaatatttaaatatcaaacccattctcct
aaaaaaagtcatactttaaataatctttcttttgtaattacaggaaaattaaattattca
agatcattctatgaacaaaaaataaaagaaaataacggaagattattgaaaagcgttaat
aaaaatttagattatttaataactaatgaaaaaaatacaaatagttcaaaaatgattgct
gcattaaaatatgatataaaaataataaacgaagagcaatttttacaattaattaaaaag
gatgaaaaataa
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