Mycoavidus cysteinexigens: MCB1EB_0784
Help
Entry
MCB1EB_0784 CDS
T05801
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcys
Mycoavidus cysteinexigens
Pathway
mcys03030
DNA replication
mcys03410
Base excision repair
mcys03420
Nucleotide excision repair
mcys03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCB1EB_0784
03410 Base excision repair
MCB1EB_0784
03420 Nucleotide excision repair
MCB1EB_0784
03430 Mismatch repair
MCB1EB_0784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcys03032
]
MCB1EB_0784
03400 DNA repair and recombination proteins [BR:
mcys03400
]
MCB1EB_0784
Enzymes [BR:
mcys01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCB1EB_0784
DNA replication proteins [BR:
mcys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCB1EB_0784
DNA repair and recombination proteins [BR:
mcys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCB1EB_0784
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCB1EB_0784
MMR (mismatch excision repair)
DNA ligase
MCB1EB_0784
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCB1EB_0784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF4796_N
RUBY_RBDX
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBE08945
UniProt:
A0A2Z6EV39
LinkDB
All DBs
Position
932334..934388
Genome browser
AA seq
684 aa
AA seq
DB search
MHNPVDNDKAERAARLRAQIEKHNYAYYVQDAPAIPDAEYDRLFAELAAIETENPHLLTP
DSPTQRVNGQVAEGFQPVMHTLPMLSLNNGFSDEEIEAFDKRCTQGLYKTEPAASLNYAC
ELKFDGLAVALRYVDGVFVQAATRGDGVRGEDITANIRTVHSIPLRLKGASIPELLEVRG
EVFMLKSAFENLNQRQRAAGQKEFANPRNAAAGSLRQLNPKITASRSLSFFAYGIGALVG
MAMPPTHQALLDWYLELGIPVCEKRAVVQGVAGLLGFFKAMSEQRNTLPYEIDGVVYKLN
RLEEQQQLGFVARAPRFALAHKFPAQEALTKLIAIEVNVGRTGAITPIARLEPVFVGGAM
VTNATLHNEDEVRRKDILIGDTVIVRRAGDVIPEVVSVLTERRPADAYGFEMPTECPVCG
SAIERLPGEAIARCTGALACAAQRKQALWHFAQRRALDIDGLGEKIIEQLVAKNLVRTPA
DLFKLDFATLVELERFADKSAQNLLAALHQAKQTTLARFIYALGIRHVGETTALDLARYF
GALDPLIQASREVLLEVNDVGPVVAEAILQFFAQAHNLEVIEELRAAGVTWPERPPAARP
SAGPLAGKTVVLTGSLLNFTREQAKAQLEAAGAKVAASVSKKTDYVIAGAEAGSKLAKAE
TLGIEVLDEDGLRQLLASVESSPE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcataacccagtagacaatgacaaagctgagcgcgcggccaggttgcgcgcgcaaatc
gagaagcacaattacgcttattacgtacaggatgctccggcaattcccgatgccgaatac
gaccgattgtttgccgagttagcggccattgaaactgaaaaccctcacttgctgaccccc
gattctcctacgcaacgcgtaaacggccaggtcgccgaaggctttcagccagttatgcat
acgctgccaatgttgtcactaaataatggttttagcgacgaagaaattgaagcatttgat
aaacgctgtacccaagggctgtataagaccgagccagcagcaagtttaaattatgcatgt
gagcttaagtttgatggtcttgcggtggcgttgcgctatgttgatggggtgttcgtgcaa
gcggcaacccggggcgatggtgtgcgcggggaagatattaccgccaatattcggactgtg
cattcgattccactgcgcttgaaaggcgcctctatccctgagttgcttgaggtaagggga
gaggtgtttatgctgaaaagcgcttttgaaaatttaaaccagcgccagcgggccgccggc
cagaaagagtttgctaatccacgtaatgcggcagcaggtagcttgcgccagctcaacccc
aaaatcaccgccagccggtcgttgtcattttttgcttatgggatcggcgcgcttgttggg
atggcaatgccgccaacacatcaagctttgcttgattggtatctagagctaggcatcccg
gtttgtgagaagcgtgcggtcgtacagggagtggcggggttgcttggcttttttaaggcg
atgagcgagcaacgcaatacattgccttatgagattgatggcgtagtctataaactgaac
cggctggaagagcagcagcagcttggttttgttgcgcgcgcgccgcgctttgcgctggcg
cataaatttcctgcgcaagaggcgttaactaagttgattgcaattgaggttaatgtgggc
cgcactggcgctatcaccccaatcgcgcggcttgagccggtgtttgtagggggggcaatg
gtgaccaatgccaccttgcacaatgaagatgaagtgcggcgcaaggatattttgattggc
gatacggtgattgtgcggcgcgctggcgatgtgattccagaagtggtcagcgtcttaact
gaacgtcggcccgctgatgcatatggttttgagatgccaaccgaatgcccagtatgcgga
tctgcgattgagcgcttaccgggcgaggcgattgctcgctgtaccggcgctttagcgtgt
gccgcacagcgtaagcaagcgctgtggcactttgcgcagcggcgcgcgctagatattgat
ggcctgggagaaaaaattatcgaacaactcgtcgcaaaaaatctggtgcgcacgcctgct
gatttgtttaaactagactttgcaacgctggtggaactcgagcgttttgctgataaatct
gcgcaaaatttactggccgcgttacatcaggctaagcagactacattggcgcgctttatc
tatgcgcttggcatacgtcatgtgggtgaaacaaccgcgcttgatctagcccgttatttc
ggcgcgcttgatcctctgatacaggcatcgcgtgaagtgctgctcgaagtcaatgacgta
gggccagtcgtggcggaagcgatcctccaattttttgctcaagcgcataatcttgaggtg
attgaagaattacgcgccgcaggcgtgacctggcctgagagaccacctgctgcgcggcct
agcgcaggacccttggccggtaaaacggtagttctgacaggaagtttactgaatttcacg
cgcgagcaagcaaaggcgcaactggaggccgcgggggcaaaagtagcggcttcagtttca
aaaaaaaccgattatgtgattgctggggccgaggcgggtagcaaacttgcgaaagccgag
acactgggcattgaagtgttggatgaagatggtctacgtcagttattggcaagcgtagag
tcgtcgccagaatga
DBGET
integrated database retrieval system
