Mycolicibacterium diernhoferi: K0O62_10560
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Entry
K0O62_10560 CDS
T07506
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mdf
Mycolicibacterium diernhoferi
Pathway
mdf03030
DNA replication
mdf03410
Base excision repair
mdf03420
Nucleotide excision repair
mdf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0O62_10560 (ligA)
03410 Base excision repair
K0O62_10560 (ligA)
03420 Nucleotide excision repair
K0O62_10560 (ligA)
03430 Mismatch repair
K0O62_10560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdf03032
]
K0O62_10560 (ligA)
03400 DNA repair and recombination proteins [BR:
mdf03400
]
K0O62_10560 (ligA)
Enzymes [BR:
mdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K0O62_10560 (ligA)
DNA replication proteins [BR:
mdf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K0O62_10560 (ligA)
DNA repair and recombination proteins [BR:
mdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K0O62_10560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0O62_10560 (ligA)
MMR (mismatch excision repair)
DNA ligase
K0O62_10560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K0O62_10560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QYL24649
LinkDB
All DBs
Position
2248941..2251016
Genome browser
AA seq
691 aa
AA seq
DB search
MSSPDADTRGRWQELAEEVRGHQFRYYVKDAPIVSDAEFDALLRELQAIEDQYPELRTPD
SPTQLVGGAGFATNFGAADHLERMLSLDNVFDTDELSAWAARISAETGADTEYLCELKID
GVALALVYRDGVLVRGATRGDGRSGEDVTLNARTIEDVPERLTGTDEFPVPSVLEVRGEV
FFRLADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGKVEGFT
PASLHDAYRALGAWGLPVSTHTTKVRGIGAVAERIAYWGEHRHDVEHEIDGVVVKVDDVS
LQRRLGATSRAPRWAVAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVKVAGSTVGL
ATLHNATEVKRKGVLIGDTVVLRKAGDVIPEVLAPVVDLRDGTEREFVMPTTCPECGTPL
APAKEGDADIRCPNTRSCPAQLRERVFHAAGRGAFDIEGLGYEAATALLQAGVIADEGDL
FTLTAEDLLRTDLFTTKKGELSANGKRLLANLGKAKSQPLWRVLVALSIRHVGPTAARAL
AGEFGSLDAIIAASEAELAAVEGVGPTIAAALIEWFEVDWHRVIVDKWRAAGVRMVDERD
AGIERTLEGLSIVVTGSLTGFSRDEAKEAILARGGKAAGSVSKKTSYVVAGDAPGSKYDK
AIELGVPVLDEEGFRRLLDEGPEPEPETEQS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcaccggacgccgatacacgtggtcgctggcaggaacttgccgaggaagtgcgt
ggccatcagttccggtactacgtcaaggatgctccgatcgtctcggacgccgaattcgac
gccctgctgcgcgagttgcaggccatcgaggaccagtatccggagctgcgtaccccggac
tcgccgacccagctggtcggcggcgccggcttcgccaccaacttcggtgcggccgaccat
ctggagcggatgctgtccctggacaacgtgttcgacaccgatgagctgtccgcctgggcg
gcgcggatcagtgcggagaccggagccgataccgagtacctgtgcgagctgaagatcgac
ggtgtcgccctggccctcgtctaccgcgacggggtgctggtgcgcggcgccacccgcggt
gacggccgcagcggcgaggacgtcactctcaacgcccgcaccatcgaggacgtcccggaa
agactcaccggcacagacgaattcccggtgccatcggtgctggaagtccggggcgaggtg
ttcttccggctcgccgatttcgaggaactcaacgccggcctggtggccgagggcaagccg
ccgttcgccaacccgcggaacagcgcggccggttcgctgcgccagaagaacccggcggtc
accgcgcggcgccggctgcggatgatctgccacggcctgggcaaggtggaggggttcacc
cccgcctccctgcacgatgcgtaccgggcgctcggggcctggggactgccggtgtccacg
cacaccacgaaggtgcggggcatcggcgccgtcgccgagcgcatcgcctactggggcgaa
caccgccacgacgtcgagcacgagatcgacggcgtggtggtcaaagtcgacgacgtatcg
ctgcaacgccggttgggtgcgacctcccgggcgccgcgctgggcggtggcctacaagtac
ccgcccgaggaggtcaccaccaagctcctcgatatccgggtcagtgtggggcgcaccggc
cgggtcaccccgttcgcctacatggagccggtgaaggtggccgggtccaccgtcgggctg
gcgaccctgcacaacgccaccgaggtcaagcgcaagggcgtgctgatcggcgacaccgtg
gtgttgcgcaaggccggtgacgtcatccccgaggtgctggccccggtggtcgacctgcgt
gacggcaccgagcgtgaattcgtcatgcccacaacgtgtccggaatgcggcacgccgctg
gcgccggccaaggagggcgacgccgacatccggtgccccaacacccgcagctgcccggcg
caattgcgtgagcgggtgttccacgccgccggtcgtggcgccttcgacatcgaggggctg
ggctacgaggcggccaccgcgctgctgcaggccggggtgatcgccgacgagggcgatctg
ttcaccctcaccgccgaggatctgttgcgcaccgacctgttcaccaccaagaagggtgag
ctgtcggccaacggcaaacggttgctggccaacctcggcaaggcgaaatcccagccgctg
tggcgggtgctcgtcgcgctgtccatccggcacgtcgggccgaccgcggcgcgcgcactg
gccggtgagttcggcagcctggacgcgatcatcgccgcctccgaggccgagctggccgcg
gtggagggcgtcgggcccaccatcgccgcggcgctgatcgaatggttcgaggtggactgg
caccgggtcatcgtggacaagtggcgcgccgccggggtccggatggtcgatgagcgtgac
gccgggatcgaacgcaccctggagggcctgtcgatcgtggtgaccgggtcgctgaccggg
ttctcccgcgacgaggccaaggaagccatcctggcccggggcgggaaggccgccgggtcg
gtgtcgaagaagacgtcgtacgtggtcgccggggacgccccgggttccaagtacgacaag
gcgatcgaactcggggtgccggtgctcgacgaggaagggttccgcaggttgttggacgag
gggcccgaaccggaaccggagacggagcagagctag
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