Methylomonas sp. DH-1: AYM39_12250
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Entry
AYM39_12250 CDS
T04396
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03030
DNA replication
mdh03410
Base excision repair
mdh03420
Nucleotide excision repair
mdh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYM39_12250
03410 Base excision repair
AYM39_12250
03420 Nucleotide excision repair
AYM39_12250
03430 Mismatch repair
AYM39_12250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdh03032
]
AYM39_12250
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_12250
Enzymes [BR:
mdh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AYM39_12250
DNA replication proteins [BR:
mdh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AYM39_12250
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AYM39_12250
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYM39_12250
MMR (mismatch excision repair)
DNA ligase
AYM39_12250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AYM39_12250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
NADase_NGA
Motif
Other DBs
NCBI-ProteinID:
ANE55877
LinkDB
All DBs
Position
2761821..2763776
Genome browser
AA seq
651 aa
AA seq
DB search
MLSDSQTHLLRQAGAVLQDIGEHRFCELCRHPQQIESAGDGELVAFLRIANALYRGGEPA
ISDSDYDFIFLAELKKRQPDHPLLHEVEPEPAFAGKTVDLPVMMLSTDKAYSRDEVERWA
ARIEKAAEELGKNFAALNFKITPKLDGYAAYDDGQMLYTRGDGRKGQDISRVFERGLQVA
NQGRRGLGAGEIVVSRSYFDRNLADFFDNPRNFQASVIKEKELDEHAQQAIDDHAAVFYP
FALLPAWTGSWAELIADFEGHVKTIWHKVDYDVDGVILEIADEELKTYLGATRHHHRWQL
AYKENLETAEVRILQVVPQTSRSGRITPVAELEPTRLSGALLSWATAHHYKMVVDKGIGP
GALIRLARSGEVIPKIEAVINPAEPDIPEACPSCGHALIWDNDYLLCPNNLACPAQISNS
MEHFFRVLKNNDGFGAATIKRLYEHGIRRVDQIYALDTEQFENMGFGPKQSQNLVDQLLR
SRREAVEDWRFLAAFGVFRMGLGNCERLLAHHPLQNIFQLSEADIVAIEGFAEKTAAVIT
EGFANIKPLFDQLMALGFNLQASQAQPDESAHPLAGKTLVFTGTLHSGSRDELSKQAKAK
GAKVGSSVSAKTDYLVAGDNVGANKTNTAREKGVTVISEAEFLALLHGDGQ
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgctcagcgacagccaaacacatctgctccgccaagccggagccgtgttgcaggacatc
ggcgaacaccgcttttgcgagctgtgccgccatccgcaacaaatcgaatcggccggcgac
ggcgaactggtcgcctttctgagaatcgctaacgccctctaccgcggcggcgagccggcc
atcagcgacagtgactacgatttcatctttctggccgagttaaaaaaacgccagcccgac
catccgttgttgcacgaggtggaaccggagccggctttcgccggcaaaaccgtcgacctg
ccggtcatgatgctgtccaccgacaaggcttacagccgcgacgaagtggaacgctgggcg
gcacgcatcgaaaaagcggccgaggaactgggcaaaaactttgccgcgctgaacttcaag
atcacgccgaagctggacggctacgccgcctacgacgacggccagatgctttatacccgc
ggcgacggccgtaaaggccaggacatcagccgcgtattcgaacgcggcttgcaggtcgcc
aaccaaggccgacgcgggctgggtgccggcgaaatcgtagtcagccgcagttatttcgac
cgcaatctggccgactttttcgacaacccgcggaattttcaagccagcgtcatcaaggaa
aaagaactggacgaacacgctcaacaagccatcgacgaccatgccgcggtgttttatccg
tttgcattgctgcctgcctggaccggctcttgggccgaattgatcgccgacttcgaaggc
cacgtcaaaaccatctggcataaagtcgactacgacgtcgacggcgtgatactggaaatt
gccgacgaggaattgaaaacctatctcggcgccacccgccaccaccaccgctggcagttg
gcttacaaggaaaatctggaaacggccgaagtcagaattctgcaggtcgtaccgcaaact
tcgcgctcgggccggatcacgccggtagccgaactggaaccgacccgcctcagcggcgcc
ctcctgtcgtgggctacggcccaccattacaagatggtggtcgacaaaggcatcggaccc
ggcgcactgatccgcttggcgcgctccggcgaggtaattccgaaaatcgaggccgtaatc
aatccggccgaaccggacatccccgaggcctgccccagttgcggccatgctttgatatgg
gataacgactatctgctttgcccgaacaatctggcttgtccggcgcaaatcagcaacagc
atggagcactttttcagagtgttgaaaaacaacgacggcttcggcgcagcgacgatcaaa
cgcctctacgaacacggtatccgccgcgtcgatcaaatttacgctctcgataccgagcaa
ttcgaaaacatgggcttcggcccgaaacaatcgcaaaacctggtcgaccaattattgcgc
agccggcgggaagcagtcgaagactggcgctttctggccgcgttcggcgtatttcggatg
ggattgggcaattgcgaacgtttgctggcccaccatccattgcaaaacattttccaactc
agcgaagccgacattgtcgcgatcgaaggctttgccgagaaaaccgccgcggtgattacc
gaaggcttcgccaatatcaaacccttgttcgatcagttgatggcgctgggttttaaccta
caggccagccaggctcaaccggacgaaagcgctcacccgttggccggcaaaaccctggta
tttaccggcacgctgcacagtggcagccgcgacgagctcagcaaacaagccaaagccaag
ggcgccaaagtcggcagttcggtatcggccaaaaccgactatctggtagccggcgacaac
gtcggcgccaataaaaccaacaccgcgcgcgaaaaaggcgtgacggtgatcagcgaggcg
gaatttctggccttgctgcacggagacgggcaatga
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