Methylorubrum extorquens DM4: METDI0564
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Entry
METDI0564 CDS
T00947
Symbol
nth
Name
(GenBank) endonuclease III DNA glycosylase/apyrimidinic (AP) lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
METDI0564 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI0564 (nth)
Enzymes [BR:
mdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
METDI0564 (nth)
DNA repair and recombination proteins [BR:
mdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
METDI0564 (nth)
Prokaryotic type
METDI0564 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
EndIII_4Fe-2S
HHH
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
CAX22216
UniProt:
C7CAJ1
LinkDB
All DBs
Position
532799..533500
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AA seq
233 aa
AA seq
DB search
MPALAAGVETSPEPVDDATLVEIFSRLRAADPEPRSELEYLNPYTLLVAVVLSAQATDKS
VNLATAPLFAIADTPQKMLDLGEEQVRHFIRTIGLFNTKAKNVIALSRILLERHDGAVPC
EAEALEVLPGVGTKTASVVLNVAFGVPRIAVDTHNFRVSNRIPLFSGATTDKVQAGLEAR
VPEPFRLNAHHWLILHGRYICKARRPECPRCSIADLCRYPSKTTALTPISTGD
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
atgccggctctggcggccggcgtcgaaacctcgcccgaacccgtcgatgacgcgaccctg
gtcgagatcttttcgcggctgcgcgcggccgatccggaaccgcgttcggaactcgaatac
ctgaatccctatacgctgctcgtcgccgtggtgctctcggctcaggccaccgacaaaagc
gtgaacctcgcgaccgccccgctcttcgccatcgccgacacgccgcagaagatgctggat
cttggggaggagcaagttcgccacttcattcgcaccatcggcctgttcaacaccaaggcg
aagaacgtcatcgcgttgtcgcggattttgctggagaggcacgacggcgcggtgccgtgc
gaggccgaggccctggaggtgttgccgggcgtcgggacgaagacggcgagcgtcgtgctc
aacgtggccttcggcgtaccgcggatcgcggtcgatacccacaacttccgcgtctcgaac
cgcattcccctgttttccggagcgacgaccgacaaggtgcaggcggggctggaggcgcgg
gtgccggagccgttccggctcaacgcccatcactggctgatcctgcacgggcgctacatc
tgcaaggcccgccggccggaatgtccgcgttgcagcatcgcggatctctgccgctacccc
tcgaagacgacggcactcacccccatatcgaccggggattag
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