Methylorubrum extorquens DM4: METDI5692
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Entry
METDI5692 CDS
T00947
Symbol
dnlJ
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03030
DNA replication
mdi03410
Base excision repair
mdi03420
Nucleotide excision repair
mdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
METDI5692 (dnlJ)
03410 Base excision repair
METDI5692 (dnlJ)
03420 Nucleotide excision repair
METDI5692 (dnlJ)
03430 Mismatch repair
METDI5692 (dnlJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdi03032
]
METDI5692 (dnlJ)
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI5692 (dnlJ)
Enzymes [BR:
mdi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
METDI5692 (dnlJ)
DNA replication proteins [BR:
mdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
METDI5692 (dnlJ)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
METDI5692 (dnlJ)
NER (nucleotide excision repair)
GGR (global genome repair) factors
METDI5692 (dnlJ)
MMR (mismatch excision repair)
DNA ligase
METDI5692 (dnlJ)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
METDI5692 (dnlJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
Motif
Other DBs
NCBI-ProteinID:
CAX27296
UniProt:
C7C8Y9
LinkDB
All DBs
Position
complement(5679568..5682012)
Genome browser
AA seq
814 aa
AA seq
DB search
MLSTPLSAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIE
ARFPALTGTTEASAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPA
EEAVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEGI
PEVLEVRGEIYLSHDDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFA
YAWGEVSEPFNDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDID
GVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKP
VTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVLDK
RPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNG
FDLEGFGQTYIEVLFEAGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKP
TKKKGEEEDKAIKNLLASLEARRKIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAA
LSAATQEQAGQDWLELSALPRIGPGTRDRLFETLDPLPGEAMQDLSLGARLRGRLTPSQR
EAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR
ALLEEVGTEPLVATTSAAAFAGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTDL
VVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLADA
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcacgcccctttccgccgccgtcgaagccctgagcgaggatgccgcccaggcg
cgccatgccgagctgtcgcgggcgatcgagcgggcgaaccagctctactacaacgaggac
gcacccgaactcaccgacgccgaatatgacgccctgcgccaggagctggaggcgatcgaa
gcgcgctttcccgcgctgaccggcaccaccgaggcgagcgcgggcgtcggcgccaagcct
tcggaaaagttcgccaaggtccggcacgcggtgccgatgctctcgctcggcaacgccttc
gccgacgaagacgtggacgagttcgtcgcccgcgtgcgccgcttcctcaacctgccggcc
gaggaggcggtcgccttcaccgccgagccgaagatcgacgggctgtcgctgtcgctgcgt
tacgaagcgggccggctcgtcaccgcagcgacgcggggcgacggcgaggtcggcgagaac
gtcaccgccaacgcgctgacggtggacgacatcccggaaacgctctccggcgagggcatt
cccgaggtgttggaggtgcgcggcgagatctatctctcgcacgacgatttcgcggcgatc
aacgcgcgccaggaggcggcgggcaagccgctcttcgccaatccgcgcaacgccgcggcc
ggctcgctgcgccagctcgatccggcgatcaccgcgtcgcgcccgttgcgcttcttcgcc
tatgcctggggcgaggtctccgagcccttcaacgatacgcaatcggcggtgctggagcgg
ttccgcggctggggcctgccggtgaacccgcggaccaagctgtgccgctcggccgaggag
atgatcgcacattatcgcgccatcgaggcggagcgggcgggtctcggctacgacatcgac
ggcgtcgtctacaaagtggacgacctcggcttccagcgccggctcggcttcgtcagccgc
gcgccgcgctgggcgctggcgcacaaattcgcggcgcaggaggcgatcaccgaactcctc
gccatcgacatcaatgtcggccgaaccggctcgctcaacccgctggcgcgcctcaagccc
gtcaccgtcggcggcgtggtggtgtcgaacgcgactttgcacaacgagggctacgtccag
ggcgtcggcgccgacggcgagccgatccgcgagggccgcgacatccgcgtcggcgacacc
gtgatcgtggtgcgcgcgggcgacgtcatcccgaaggtgcgggacgtagtgctcgacaag
cgcccggccgacgccgtgccctacgtcttcccggacacctgcccggcctgcggcagccgg
gccgtgcgtgaactcaacccgcgtacgaaaaaactcgatgcgatccgccgctgcaccggc
gggctgatctgcccggcgcagggggtggagcggctgaagcacttcgtttcgcgcaacggc
ttcgacctcgaaggcttcggccagacctatattgaggtgctgttcgaggccggcctcgtg
aagcagcccgccgacctgttccgcctggagttcgagccgctgaaggcggccatcgtcgcc
cgacgcgaagcgctgtccgcgcagcgccgcaccgagggcgagccggctccgaagaagccg
acgaagaagaagggcgaggaagaggacaaggcgatcaagaacctgctcgcctcgctggag
gcgcggcggaaaatcccgctcaaccgcttcctgttcgccctcggcatcccgcagatcggc
gagtcgacggccaaggcgctggccaagcgcttccccgacatgcccgctctgatggcggcc
ctctcagcggcgacgcaggagcaggcgggccaggactggctcgaactctcggcactgccg
cggatcggacccggcacccgcgaccgtctgttcgagaccctcgacccgctgcccggcgag
gcgatgcaggatctgagcctcggcgcccgcctgcgggggcggctgacgccgtcgcagcgc
gaggcggtgctcgcccattacggcagcgaggcggaggccgacgcggcgctggagcgggcg
gcctcgcagcggcccggcgacgcctaccggctgttcgccgatgatggcgagatcggcccc
gtggcgacggattcgctgatccagttcttctccgagccgcacaacgacgcggcggttcgg
gcgctgctcgaagaggtgggaaccgagccgcttgtcgccacgacctcggcggcggcgttt
gccggcaagacggtggtgttcaccggctccctcgaaaagatgacccgcagcgaggccaag
gccaccgccgagcgcctgggcgccaaggtctccggctcggtctcggccaagaccgacctc
gtggtcgccggccccggcgccggctcgaagctcaaggacgccgagaagcacggggtgaag
gtggtctcggaggacgattggctggcgatgttggcggacgcgtaa
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