Mucilaginibacter daejeonensis: LLH06_17200
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Entry
LLH06_17200 CDS
T07909
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mdj
Mucilaginibacter daejeonensis
Pathway
mdj03030
DNA replication
mdj03410
Base excision repair
mdj03420
Nucleotide excision repair
mdj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LLH06_17200 (ligA)
03410 Base excision repair
LLH06_17200 (ligA)
03420 Nucleotide excision repair
LLH06_17200 (ligA)
03430 Mismatch repair
LLH06_17200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdj03032
]
LLH06_17200 (ligA)
03400 DNA repair and recombination proteins [BR:
mdj03400
]
LLH06_17200 (ligA)
Enzymes [BR:
mdj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LLH06_17200 (ligA)
DNA replication proteins [BR:
mdj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LLH06_17200 (ligA)
DNA repair and recombination proteins [BR:
mdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LLH06_17200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LLH06_17200 (ligA)
MMR (mismatch excision repair)
DNA ligase
LLH06_17200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LLH06_17200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
zf-NADH-PPase
Auto_anti-p27
5_3_exonuc
HHH
RNA_ligase
Trm112p
Motif
Other DBs
NCBI-ProteinID:
UEG52685
LinkDB
All DBs
Position
complement(4008564..4010570)
Genome browser
AA seq
668 aa
AA seq
DB search
MSTHIKQQIDDLTAELKQHNYNYYVLAQPTISDQDFDLKLKELAKLEEANPELAHADSPT
QRVGGEVTKEFQTVRHRWPMLSLGNTYSEQELLEFDQRVRKAIGDNFEYVVELKFDGLSM
SMTYENGKLARAVTRGNGVEGDDVTTNVRTIHTVPKTLKGDGYPDLFEIRGEVFMHRKAF
DRLNNERIENGEVAYANPRNFASGTMKLQDSAEVARRPLDCFLYALHMERSPYKTHWESL
QAIKKWGFHVSDDSKLCSNINEVLKYIEHWDTARFDLSFDIDGIVIKVNNYGQQEELGFT
AKVPRWAISYKFKAERVETSLESVSYNVGRTGAVTPVANLKPVLLAGTTVKRATLHNANE
ILRLDLHEGDTVYVEKGGEIIPKIISVNPDKRKPNAEPIVYLTNCPVCGTPLERKEGEAA
FYCPNDEGCPPQIVSKMQHFVGRKAMDIDGLGDETLETLYQKGFISHISDIYDLHLRADE
LKQMDRFGERSITNMLAGIEKSKEKPFEKVLFGLGIRYVGETVARKLVAHFKTLERMQAA
TLEEITAVDEIGERIAQSLVEYLSGEVHQQELQKLKSQGLQFAAEEKEVVLASDKLAGKT
FIISGVFEKYSRDELKEMIEQNGGKILSSISAKLNYLVAGDNMGPSKLEKANKLNIPIIT
DEELLKML
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctacccatatcaaacaacagatcgatgatctgaccgccgagctaaaacagcataac
tataattactatgtgctggcgcagcccaccatcagcgatcaggattttgatctgaagctt
aaagaactcgccaaactggaagaggccaatcccgagcttgcccatgccgactcgcccacc
caaagggtaggcggcgaggtgaccaaagagttccagaccgtgcgccaccgctggcctatg
ctgtcattaggcaacacctacagtgagcaggaactgctggaatttgatcaacgcgtgcgt
aaggccattggcgataattttgaatatgtggtagagctcaagttcgatggattgagcatg
agcatgacctacgagaacggtaaactggcccgcgccgtcacgcgcggcaacggggtagag
ggcgacgacgtgaccaccaacgtccgcactatacataccgtacccaaaacgctgaaaggt
gacggctaccccgacctgttcgagatacggggcgaggtgttcatgcaccgcaaggctttt
gaccgcttgaacaatgagcgcatcgagaatggtgaggtggcttatgccaacccgcgcaac
tttgcctcaggcaccatgaaacttcaggactctgccgaggtggcccgccgcccgctcgat
tgctttttatatgccctgcacatggagcgctcgccctacaaaacacattgggaaagtttg
caggccatcaaaaaatggggcttccatgtgagtgacgatagcaaactgtgcagtaatatc
aatgaggtgctcaaatacatcgaacattgggatacggcccgtttcgacctcagttttgat
atcgatggtatcgtgatcaaggtgaacaactacggccagcaggaagaactgggctttacg
gccaaagtgccgcgctgggccatctcttataaattcaaggccgagcgggtagagacctcg
ctcgaaagcgtgtcatacaacgtaggtcgtacgggtgccgttaccccggtggccaacctg
aagccggtcctgctggccggcaccaccgttaaacgtgccactctgcacaatgccaacgag
atcctccgcctcgacctgcacgaaggcgataccgtatacgtagaaaaaggcggcgagatc
atccccaagatcatcagcgtgaaccctgacaaaagaaagcctaatgccgagccgatcgta
tatctcaccaattgcccggtatgcggtaccccgctcgaacgtaaagaaggcgaggccgcg
ttctattgccctaacgacgaaggctgcccaccgcagatcgtgagcaagatgcagcatttt
gtaggtcgcaaggccatggacattgacggtttgggtgatgagaccctggaaacgttgtac
caaaaaggtttcatctcgcatatcagcgatatctacgacctgcacctccgtgccgacgaa
ttaaaacagatggaccgctttggcgaacgctcgatcaccaacatgcttgccggtatcgaa
aagtcgaaagaaaagccatttgaaaaagtactgttcggcctgggtatccgttacgtgggg
gagaccgtggcccgcaaactggtggctcacttcaagaccttagaacgcatgcaagccgcc
accctcgaagagatcaccgctgtggacgagatcggcgaacgcattgcccaaagcctggtg
gaatacctgagcggtgaggtgcatcagcaggaattgcaaaagctcaaaagccagggtctt
cagttcgcggccgaagaaaaggaagtggtcctggccagcgataaactggcaggcaagaca
tttatcatatcaggtgtgttcgaaaaatactcgcgcgatgagctcaaagagatgatcgag
cagaacggcggcaagatcttgagcagcatatcggccaaattgaactacctggtggccggc
gataacatgggcccttctaaactcgaaaaggccaacaaactaaatattcctatcattacc
gatgaagaattgttgaagatgctttaa
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integrated database retrieval system