KEGG   PATHWAY: mdm00195
Entry
mdm00195                    Pathway                                
Name
Photosynthesis - Malus domestica (apple)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
mdm00195  Photosynthesis
mdm00195

Module
mdm_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:mdm00195]
mdm_M00161  Photosystem II [PATH:mdm00195]
mdm_M00163  Photosystem I [PATH:mdm00195]
Organism
Malus domestica (apple) [GN:mdm]
Gene
103401257  [KO:K02716]
103402526  [KO:K02639]
103402879  [KO:K08901]
103403899  [KO:K02692]
103403993  [KO:K02639]
103404760  [KO:K02636] [EC:7.1.1.6]
103405142  [KO:K02717]
103405453  [KO:K02695]
103408692  [KO:K02699]
103409108  [KO:K02641] [EC:1.18.1.2]
103409454  [KO:K02639]
103412183  [KO:K02693]
103416404  [KO:K02701]
103417553  [KO:K08905]
103419007  [KO:K08901]
103420850  [KO:K02638]
103423489  [KO:K02694]
103424798  [KO:K14332]
103425043  [KO:K02641] [EC:1.18.1.2]
103425509  [KO:K02723]
103425919  [KO:K08902]
103426332  [KO:K02113]
103428016  [KO:K02693]
103428089  [KO:K03541]
103429793  [KO:K02113]
103430669  [KO:K02723]
103432238  [KO:K02701]
103434480  [KO:K02717]
103434631  [KO:K08901]
103435639  [KO:K02698]
103435687  [KO:K02721]
103435763  [KO:K08903]
103438301  [KO:K02115]
103438778  [KO:K03542]
103439960  [KO:K02692]
103441544  [KO:K02639]
103441569  [KO:K03542]
103441940  [KO:K02639]
103442529  [KO:K08902]
103442560  [KO:K02636] [EC:7.1.1.6]
103443153  [KO:K02717]
103443793  [KO:K02695]
103443904  [KO:K02113]
103445471  [KO:K08903]
103445710  [KO:K02721]
103445766  [KO:K03541]
103446065  [KO:K02694]
103446115  [KO:K02641] [EC:1.18.1.2]
103446135  [KO:K02698]
103446721  [KO:K02115]
103448401  [KO:K02115]
103448539  [KO:K08901]
103450341  [KO:K02638]
103451149  [KO:K02699]
103451487  [KO:K08901]
103451800  [KO:K08901]
103453123  [KO:K02639]
103453352  [KO:K02639]
103456305  [KO:K02641] [EC:1.18.1.2]
108169624  [KO:K02109]
108173451  [KO:K02115]
114819557  [KO:K14332]
114820558  [KO:K02716]
114824972  [KO:K08906]
114827739  [KO:K08906]
114827802  [KO:K08901]
13630196  atp8; ATP synthase F0 subunit 8 [KO:K02109]
139196617  [KO:K02111] [EC:7.1.2.2 7.2.2.1]
139197573  [KO:K02717]
71430788  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
71430793  psbK; photosystem II subunit K [KO:K02712]
71430794  psbI; photosystem II subunit I [KO:K02710]
71430798  atpA; CF1 subunit alpha [KO:K02111] [EC:7.1.2.2 7.2.2.1]
71430799  atpF; CF0 subunit I [KO:K02109]
71430800  atpH; CF0 subunit III [KO:K02110]
71430801  atpI; CF0 subunit IV [KO:K02108]
71430807  petN; cytochrome b6/f subunit N [KO:K03689]
71430808  psbM; photosystem II subunit M [KO:K02714]
71430813  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
71430814  psbC; photosystem II 43 kDa protein [KO:K02705]
71430816  psbZ; photosystem II subunit Z [KO:K02724]
71430820  psaB; photosystem I P700 apoprotein A2 [KO:K02690] [EC:1.97.1.12]
71430821  psaA; photosystem I P700 apoprotein A1 [KO:K02689] [EC:1.97.1.12]
71430833  atpE; CF1 subunit epsilon [KO:K02114]
71430834  atpB; CF1 subunit beta [KO:K02112] [EC:7.1.2.2 7.2.2.1]
71430837  psaI; photosystem I subunit I [KO:K02696]
71430840  petA; cytochrome f [KO:K02634]
71430841  psbJ; photosystem II subunit J [KO:K02711]
71430842  psbL; photosystem II subunit L [KO:K02713]
71430843  psbF; cytochrome b559 subunit beta [KO:K02708]
71430844  psbE; cytochrome b559 subunit alpha [KO:K02707]
71430846  petG; cytochrome b6/f subunit G [KO:K02640]
71430849  psaJ; photosystem I subunit J [KO:K02697]
71430855  psbB; photosystem II 47 kDa protein [KO:K02704]
71430856  psbT; photosystem II subunit T [KO:K02718]
71430858  psbH; photosystem II subunit H [KO:K02709]
71430859  petB; cytochrome b6 [KO:K02635]
71430860  petD; cytochrome b6/f subunit IV [KO:K02637]
71430892  psaC; photosystem I subunit C [KO:K02691] [EC:1.97.1.12]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
mdm00196  Photosynthesis - antenna proteins
mdm00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   

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