KEGG   Malus domestica (apple): 103400075
Entry
103400075         CDS       T03194                                 
Name
(RefSeq) uncharacterized protein
  KO
K12607  CCR4-NOT transcription complex subunit 10
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103400075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103400075
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103400075
SSDB
Motif
Pfam: TPR_2 TPR_14 TPR_1 TPR_12 ARM_TT21 TPR_11 TPR_19 ARM_TT21_N TPR_8 TPR_10 TPR_MalT SRP_TPR_like DUF627 HAT_Syf1_CNRKL1_C PknG_TPR TPR_3
Other DBs
NCBI-GeneID: 103400075
NCBI-ProteinID: XP_008336988
LinkDB
Position
15:complement(join(12489689..12491596,12492810..12492881,12492960..12493046,12493177..12493341,12495068..12495154,12495835..12496023))
AA seq 835 aa
MASSPSSTAANRDGSASAAEVEAVMSATRAFAQDALLQFQSGKFDQCLTALSECLKRKPN
DPKISHNIGLAEFYRDGCSDPKRLLDVLNDVKKRSEELARTSAEQVESGSNTGDKVALGS
KGSGAMGHSFSAVYMDEFDTYVATLNIAVIWFHLHEYAKALSVVEPLFQNRGPIDEKTAL
NICLLLLDVGLACHDAMKSADVLIYLDKAFGVSCMNQGDGGSTASQQPANPVARPPSLST
NSSATDGPTLDSDPNALEPEETSEYDNADFDMDVAQPTVLLSSNDISRNPVDISASSVYL
KLKMQLYKVQFLLLTRNLKQAKREVKNAMNIARGRDSSMALLLKSQLEYARGNYRKAIKL
LMASSNRTDTRLSSMINNNLGCIYYQLGKYHTSSVFFSNALLNCSSLRKDRPLNLSTFSQ
DNSLLIVYNCGMQYLACGKPLLAARCFQKAGLVFYNRPLLWLRFAECCLMALEKGLMKTN
LASSEVRVYVIGNGKWRQLVMEDGVSKNGNLGSFERGDLFLGSDRQPKLSVSLARQCLLN
AMSLLNRSESSYCKNSLPSNFFLEDNELGEVAASKNSNHKNFHSMNSEASVLSVGLGQVG
INGDGKEQKAGTTQELVQNSLSYYADVRNKENLLIKQALLANLAYVELELENPMKALTIA
RSLLELPECSRIYIFLGHVYAAEALCLLNRLKDAADHLMTYLSGGNDVELPFSEEDCEQL
QGVRADDYEESNGGSMAARNSSPEDRLGIAFLKPEEARANLYVNFAALYAMQGELDQARQ
FVAQALSITPNSPEATLTAVYVDLKVGQSQEALAKLKHCSRITFVPSGLTLNKAS
NT seq 2508 nt   +upstreamnt  +downstreamnt
atggcttcgtctccgtcatcaactgctgcgaatcgggacggctctgcttcagctgccgag
gtcgaagccgtcatgtccgcgacccgagcttttgcgcaggatgcgttgctgcaattccag
tcgggcaagttcgatcagtgccttaccgccttgtccgagtgcctcaagaggaagcccaac
gatcccaaaatatctcataatattggacttgcggagttctatcgagatggttgttcagat
cctaagaggttgcttgatgtgcttaatgatgtcaagaagcgaagcgaagagcttgctcga
acatctgcagaacaggtggagtctggcagcaatactggagataaagttgcattggggtcc
aaaggaagtggtgcaatgggacattccttttctgctgtttacatggatgaatttgacact
tatgttgctaccttaaacattgcggttatctggttccatcttcatgaatatgcaaaggca
ttgtctgttgttgaacctctttttcaaaacagaggacctatagatgagaaaactgctctt
aatatttgccttttgttgctggatgttgggctggcttgtcatgatgcaatgaaatctgct
gatgttttgatttatctggataaagcttttggtgtgagttgtatgaatcaaggagatggt
ggaagcactgcttcgcaacaacctgcaaacccagttgcaaggccgccatccctttctacc
aattcatcagccacagatggtcctactttagattcagatccaaatgctttggagcctgag
gagactagcgagtatgataatgcagattttgacatggatgttgcacaacctactgttcta
ttatcttcaaacgatatttctaggaatccggttgacatatctgcctcttctgtttacctg
aagcttaagatgcaactttacaaggttcagtttctgcttctcactaggaacttaaagcaa
gctaaacgtgaagtgaagaatgctatgaatattgcacgtgggagagattcttctatggct
ctccttttgaagtcccagcttgaatatgctcgtggtaattatcgtaaagccatcaagttg
ttgatggcatctagtaatcgaacagacacaaggttatcgagcatgatcaacaataatcta
ggctgcatttattaccagcttgggaaatatcacacatcatcagtgttcttctccaatgca
ttgcttaattgctcatcccttcggaaggaccggcctctaaatctctcaactttttcacag
gacaattccctcttaatcgtatacaactgtggtatgcagtacttggcttgtgggaaacca
ctacttgctgcgcgctgttttcagaaggctggtttagttttctacaatcggcctctgctg
tggcttcgatttgctgagtgctgtctgatggctttggagaagggactaatgaaaaccaat
ctggcatcatcagaagttagagtttatgtcattggcaacggaaagtggaggcaacttgta
atggaagatggggtttcgaagaatggaaacttgggttcttttgaaagaggcgatttattt
ttgggcagtgatcggcagcctaagctctccgtgtcccttgcccggcagtgtctcttgaat
gccatgtccttactgaaccgttctgagtcaagctactgtaagaattctttgccctctaat
ttcttcttagaagataatgaattaggggaagtggcagcttccaagaattcgaaccacaag
aactttcacagcatgaattccgaggcatctgtgctatctgtaggcttgggtcaggttggc
ataaatggggatggaaaagagcaaaaggcaggaaccactcaggagcttgtgcagaactcg
ctttcatattacgctgatgttcgtaacaaggaaaatctgttgatcaaacaagctcttttg
gcaaatctggcatatgtagaattggaattggaaaatcccatgaaggccttgacaattgca
agatctctcttggaacttccagaatgttcgagaatttacatctttctaggtcatgtgtat
gccgcagaggctctttgcttgctaaacaggctaaaggatgctgctgaccatttgatgaca
tatttgtcaggtggtaacgacgttgaattaccattcagtgaagaggactgtgaacaactg
caaggggtcagggccgatgattatgaagagtcaaacggaggatcaatggctgccagaaac
tcatcacctgaagacagattaggtattgcgttcctcaagccagaagaagcacgggcaaac
ctgtacgtaaattttgctgccttgtacgctatgcaaggtgaacttgaccaggctcgccag
tttgttgcacaggcattgtccataacacccaacagtccagaagcgactttgactgcagtg
tatgtggatctcaaggtcggtcagtcacaggaagctcttgccaagctgaaacactgtagt
cgaatcacatttgtaccaagcggattgacattgaacaaagcttcttga

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