KEGG   Malus domestica (apple): 103400121
Entry
103400121         CDS       T03194                                 
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
  KO
K12821  pre-mRNA-processing factor 40
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103400121
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103400121
Spliceosome [BR:mdm03041]
 Complex A
  U1 snRNP components
   U1 related factors
    103400121
 Complex B
    103400121
SSDB
Motif
Pfam: FF WW WW_TCERG1
Other DBs
NCBI-GeneID: 103400121
NCBI-ProteinID: XP_028950923
LinkDB
Position
15:join(4477833..4477865,4478172..4478234,4478332..4478649,4478742..4478933,4479260..4479333,4479553..4479622,4481174..4481226,4481347..4481404,4481484..4481851,4481957..4482029,4482197..4482295,4482429..4482497,4482577..4482654,4482843..4482929,4483027..4483061,4483175..4483280,4483937..4484017,4484120..4484212,4484313..4484366,4484435..4484551,4484678..4484776,4485551..4485598,4485681..4485773,4486401..4486508,4486587..4486651,4486757..4486859,4487029..4487331,4487426..4487557)
AA seq 1023 aa
MANNPQSSAAQPFRLPPVAPMGPQSFGSSPLQYRPVVPTQQGQQFISPAPQQFQPVGQGI
PSPNVGMPASQSQQLQYSQPMQPYPLRPSQPGHPHSSQALPMQYMQTRPITSIPSQSQQP
VPPFNNQMPGMPYSSSYVFTPPTYAQPQNNVNSQFQPMSQMQAHVVSATGQPWVSSGNQG
VAVPFPVQQSSQQSSSTPSTDSAVNVSSQAQQSSSDWQEHLAVDGRRYYFNRRTRQSNWE
KPLELMTPMERADASTVWKEYTSADGKKYYYNKVTRESKWTIPEELKLAREQAQRELIQG
THSELNLTSHTPPAVASAETPMGASSVGPSTSSALPVMVSSPVAVTPVSSFSNPSAITPT
GSSVASGAQPSITGAVGSQPSAVTVSPLPASVSGSSGVPPTSVNTTTNSLSTYETVASQD
ISSSADGTLTQDIEEAKRGMAVAGKVNVTPSEEKTFDDEPLVYANKQEAKTAFKSLLESA
NVQSDWTWEQTMREIITDKRYGALRTLGERKQAFNEYLGQRKKLENEERRVRQKKAREEF
TKMLEESKELTSATKWSKAVSMFENDGRFKAVERGRDQEDLYESYIVELERKEKEKAAED
HKQNIVEYRKFLESCDFIKVNSQWRKVQDRLEDDERCLRLEKLARLLIFQDYIRDLEKVE
EEQKKLQKEQLRRVERKNRDEFRKLMEEHVADGTLTAKTLWRDYCLKVKDLPPYEAVALN
TSGSTPKELFDDVFEELEKQYHDDKARIKDAMKSGKVAMASTLAFEEFKVPILEEIGSPP
ISDINFKLVYEELLERAKEKEEKEAKKRQRLADDFNKLLHTIKEITASSNWEDSKQLFEE
TQEYRSIGEDSVSREIFEEYITNLQERAKEKERKREEEKAKKEREREEKEKRKDKERKEK
EREREKEKGRERSKKDETDSENVDITDTHGHKEDKKREKDKDRKHRKRHQSSVDDVGSDK
EEKEESKKHRHSSDRKRSRKHTPESDSESRHRRHRREHRDGSRRIGGHDDLEDGELGEDG
EIK
NT seq 3072 nt   +upstreamnt  +downstreamnt
atggcgaataaccctcaatcctcagctgcgcagccatttcggcttcccccagttgctccc
atgggtcctcagagttttggttcatctcctcttcaataccgaccagtggttccaacacag
caaggacagcaatttatttcaccagctccccaacaatttcagcctgtgggacaaggtatt
ccttctccaaatgttgggatgcctgctagtcaaagtcagcaattacaatattctcaacca
atgcaaccgtatcctctcaggccaagtcagcctggtcatcctcactcgtcacaggcgttg
cctatgcaatacatgcaaacgaggcctattacatctatcccatcacagtctcagcaacct
gtcccaccttttaataaccaaatgcctggaatgccttattcttcctcatatgtgttcact
ccgcctacgtatgcccagccacaaaataatgtcaattcacagtttcagccgatgtctcaa
atgcaagcacatgttgtatctgctacaggacagccttgggtgtcctctggtaatcagggt
gtagcagttccttttccagtacagcagtctagccaacaatcttcaagcactccttccaca
gattctgctgtaaatgtttctagccaagcacagcaatcttcttcggattggcaagagcat
ttggcggttgatggaagaagatattatttcaacagaaggacaagacaatctaattgggag
aagcctttagaattgatgacaccgatggagagggctgatgcatcaactgtttggaaggag
tatacatctgcagatgggaaaaagtattattacaacaaggttacaagggagtctaagtgg
acaattccagaggagttgaagttggctcgtgaacaggctcaaagagaactaatccaagga
acacattcagaattgaatttgacttctcatacccctcctgctgttgcttcagctgaaaca
cctatgggagctagttcagttggccccagcacttcttcagccctacctgtgatggtctcg
agccctgttgcagttacacctgtgtcttccttttctaatccttctgctatcacacctact
ggatcatcagttgcttctggtgcacagccttccataactggtgccgttggcagtcaacct
tctgcagttactgtgagtccactgcccgcttctgtttcagggagttccggagttcctcct
acttcggtcaataccactacaaattcactgagtacttatgaaactgtagcatctcaagat
atttcaagttcagctgatggaactttgactcaagatattgaggaagccaaaagaggtatg
gcagttgctggaaaagtcaatgtgactccttcagaggagaaaacatttgatgacgaacca
ttggtgtatgccaataagcaggaggcaaaaactgcattcaaatcacttctggaatctgca
aatgttcagtccgattggacttgggagcagacaatgagggagatcattactgacaaaaga
tatggcgcattaagaactctaggtgagaggaagcaagcatttaatgagtacttgggtcaa
aggaaaaaactggagaatgaagagaggcgcgtgaggcagaaaaaagctcgggaagaattc
acaaaaatgttggaagagtccaaggaacttacatcagcaactaaatggagcaaagctgtg
agtatgtttgaaaatgatggacgattcaaggctgtagaaagaggtagagaccaggaagat
ctttatgagagctacattgtagaactcgaaaggaaggaaaaagaaaaggcagctgaagac
cataagcagaatatagtagagtaccggaaatttctggaatcttgtgactttatcaaggtg
aacagtcagtggcggaaagttcaagatcgcttggaggatgatgagagatgcttgcgcctt
gaaaagcttgccaggttgctcattttccaggactatattcgtgacctcgagaaggtggaa
gaggagcaaaagaagttacagaaggaacaattgaggcgggtagaaaggaaaaaccgcgat
gagttccgcaagctgatggaagaacatgttgccgatggcactcttacagctaaaactctc
tggcgtgattactgtttgaaggttaaagacttgcctccttatgaagctgttgcattgaac
acctctggttcaacaccaaaagaattgtttgatgatgtttttgaagaattagagaaacag
tatcatgacgataaagctaggataaaggatgcaatgaagtcagggaaggttgccatggca
tccacattggcgtttgaagagtttaaggttcctattctggaagaaattggttctccacca
atatcagacattaacttcaagcttgtgtacgaggaattattagagagagccaaggagaag
gaggagaaagaggcaaagaagcgtcaacgacttgctgatgatttcaataaacttttgcac
acaatcaaggagataacggcttcttctaattgggaagatagcaaacagctttttgaagaa
acccaagaatacagatcaattggggaagatagcgttagtagggaaatttttgaggaatac
attacaaacttacaggagagggctaaagagaaggaacgcaagcgtgaggaggaaaaggcc
aaaaaagagagagaaagagaggagaaagagaagcggaaggataaagaaagaaaggagaag
gaaagagaacgtgaaaaagaaaagggaagggaacgatctaagaaggatgaaacagatagt
gaaaatgtagacataactgatactcatgggcataaagaagataagaagagggagaaagac
aaagatagaaagcaccggaagcggcatcaaagttctgtcgatgatgtaggttctgataag
gaggagaaagaggagtctaagaaacacagacatagtagtgaccgcaaaagatcaagaaaa
catacacctgaatctgacagtgaaagtcggcatagaaggcataggagagagcatcgggat
ggttcccgtcgaattggtgggcatgacgatcttgaagatggggagcttggtgaagatggg
gaaattaagtaa

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