KEGG   Malus domestica (apple): 103400553
Entry
103400553         CDS       T03194                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03020  RNA polymerase
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103400553
  09124 Replication and repair
   03420 Nucleotide excision repair
    103400553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103400553
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103400553
Enzymes [BR:mdm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103400553
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     103400553
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103400553
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R TACC_C
Other DBs
NCBI-GeneID: 103400553
NCBI-ProteinID: XP_028946096
LinkDB
Position
02:complement(join(9629901..9629961,9630078..9630131,9630277..9630348,9630552..9633613,9633699..9633957,9634117..9634403,9634531..9634866,9634952..9635093,9635191..9635411,9635564..9635725,9635867..9636025,9636108..9636407,9636688..9636951,9637193..9637276))
AA seq 1820 aa
MDIRFPYSPAEVAKVKCVQFGILSPDEIRQMSVVEIEHSETMLGGKPKTAGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSVMRCVCFNCSKILVDEDDHK
FKQAMRIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI
EGMKMNAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDSQILGLNPKYAR
PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LQRTSAWHSESESGNITPGDTLVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL
EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLDESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKTEFDRTFTYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ
LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP
GDDQLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
SEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTVIEEDIDFVKAYYEMPDEEV
NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKA
EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP
YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSSAYSP
SSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPGSPLTSGVSPDYSPSSPQY
SPSAGYSPSQPGYSPSSTSQ
NT seq 5463 nt   +upstreamnt  +downstreamnt
atggatatccggtttccctactcgccagccgaggtggcgaaggtgaaatgcgtgcagttc
ggcatcctcagccccgacgaaatcaggcaaatgtctgtcgtggagattgagcacagtgag
actatgttgggaggcaaaccgaagacggctggtttgagtgatcctcggcttggtacaatt
gatcggaagttgaaatgtgagacgtgtacagccaacatggctgagtgccctggccatttt
gggcaccttgagcttgcaaaaccaatgtttcacatcggtttcatgaagattgtgctgtcc
gtaatgcgatgcgtttgcttcaattgctcgaaaattctagtcgatgaggacgaccacaag
tttaagcaagctatgagaataaagaatccgaaaagcaggctgaaaaaaattttggatgcc
tgcaaaaacaaaaccaaatgtgaaggtggtgatgaaattgatgtccaaggccaagatact
gaagagcctgtaaagaaaagtcggggtggctgtggtgctcagcagcccaagctctctatt
gagggtatgaaaatgaatgcagagtacaaagcccaaaggaagaaaaacgatgacccggaa
cagcttcctgaacccgtggaaaggaaacagacccttactgcagaaagggttcttagtgtt
ttaaagagaataagtgatgaagactcccaaatattgggattaaacccaaagtacgctcgg
ccagattggatgattctacaagttctgcctatacctccacaacctgtgagaccctctgta
atgatggacacctcatccaggagtgaggatgatttgactcatcaattggcgatgataatt
cgtcataatgacaatctcaggcggcaggaacgaaatggttctcctgctcatatcatttca
gagtttgcacaacttctgcaattccacattgccacttattttgacaatgagttgccagga
ctaccaagggctacgcagagatcagggaggcctattaaatcaatttgtagtagactgaag
gcgaaagaagggcgtataagaggcaacttaatggggaaacgtgttgatttttcagctcgg
acagtgattactcccgatccaaacataaacattgatcaattaggagtgccgtggagtatt
gctttgaatctcacataccccgagactgtgactccatataatattgaaaggttgaaggag
cttgttgagtatggcccccatcctccgcccggtaaaactggtgcgaagtatataataaga
gatgatgggcaaaggcttgatcttcgttatttgaagaaaagcagtgatcatcatttggag
cttggatataaggtggaacgtcatttgaatgatggagactttgtcctctttaatcgacaa
cctagtctccataaaatgtctatcatgggccacagaatcaagatcatgccatactcgaca
ttccgattgaatctgtctgtgacctcgccatataatgctgactttgacggggatgaaatg
aacatgcatgtgccccagtcctttgaaaccagggccgaagttttggagctcatgatggtg
ccaaaatgcatcgtctcacctcaggctaatcgacctgtcatgggaattgtgcaggacaca
cttttaggttgtcgtaagatcacgaagagggataccttcatagagaaggatgttttcatg
aatatcttgatgtggtgggaggattttgatggaaaagttcctgctcctgcgattttgaag
ccccggccactttggactggaaaacaggtgtttaatcttataataccaaaacaaataaat
ctccaaagaacttctgcatggcactcagaatcagagagtgggaacataactccaggggat
actcttgttagaatagaaaagggtgaattgctttctggaactctctgcaagaaggccctt
gggacttctacaggaagtcttattcatgttatatgggaagaggttggtccagatgcagcc
cgcaagtttctgggtcatacccaatggcttgtaaattactggctgctgcagaatgctttt
agcattggaattggagatactattgctgatgcagccacaatggagaaaatcaatgaaaca
atttccaaggcgaaaaatgaggtgaaagatcttataagtaaagcccaatccaagcagctg
gaggctgaacctggacgaaccatgatggactcgtttgaaaacaaagtgaaccaggtgttg
aatagggctcgtgatgacgctggaagtagtgctcaaaagagtttagatgagagcaacaat
cttaaggccatggttacagcagggtccaaagggagttttatcaacatatcacagatgact
gcttgtgtgggacagcaaaatgttgagggtaagcgaatcccgtatgggttcatagaccgg
acgttgccccactttactaaagatgattatggaccagaaagtcgtggatttgtagaaaat
tcatacctgcgtggactaactccacaggagttcttttttcatgctatgggtggtagggaa
ggtcttatagatactgctgttaagacatctgagactgggtacatccaaaggagactggtg
aaggctatggaggatattatggtgaaatatgatggcacagtacgtaattctttaggcgat
gtcattcagtttctatatggggaagatgggatggatgctgtttggatagaatcgcaaaag
ctggattctttgaaaatgaaaaaaacagaatttgataggacttttacttatgagttggat
gatgaaaattggaatcctgactacatgttgcacgaacatgttgaggatctcaaaacgatt
agagagttccgtaatgtgtttgatgcagaagttcagaaacttgaaacagatagattacaa
ctgggaacagagattgcagtcacaggggataattcttggccactgcctgttaacttgaag
aggcttatttggaatgcacaaaaaacctttaagattgacttccgaaggacttctgatatg
cacccaatggaaattgtggaagctattgataagctccaggagagactgaaagttgttcct
ggtgatgaccagttgagtgttgaagcgcagaagaacgcaacgttgtttttcaacatttta
cttcgcagcactttcgcaagcaaacgggtgttggatgagtacaggcttactcgtgaagca
tttgagtgggttattggggagatagaatcacgcttcctgcaatcacttgtagcaccaggg
gaaatgattggttgcgttgctgcacagtctattggagagcctgccactcagatgacactg
aatactttccactatgctggtgtgagtgcaaagaatgttaccctaggtgtccccaggtta
agggaaattattaatgttgccaagagaatcaaaacgccatccctctctgtctacttaaag
tctgaagctaataaaacgaaggagcgggccaagaatgtgcagtgtgctttggaatacacc
actctgcgaagtgtaactcaagctacagaagtatggtacgatccagaccccacaagcaca
gtaattgaagaggatatagattttgtgaaagcttactatgaaatgccagatgaagaggtt
aatcctgataaaatttcaccttggttgcttcgcattgagttgaatcgcgaaatgatggtg
gataagaagttgagcatggctgacattgctgagaagattaaccttgaatttgacgatgat
ttgacttgtatcttcaatgatgacaatgctgaaaaattgatccttcgtatccgtatcatg
aatgctgaagctccaaaaggggagatggttgatgaatctgctgaagatgatgtttttctg
aagaagattgagagtaacatgctgacagagatggctcttcgtggtattccagatattaac
aaagtgttcattaaacacggtaaagttaacaagttcgatcagaatgaaggatttaaagcg
gagcaagagtggatgctggataccgaaggggttaatctcttagctgttttgtgccacgat
gatgttgatgctaggcgcacaactagtaatcatttgattgaaattctggaaattctcgga
attgaggcagttcgtcggtcattgttggatgagttgagggttgttatatcgtttgatggg
tcctatgttaattatcggcatctcgctatcctttgtgacacgatgacctaccgtgggcac
ttaatggcaataactcgtcatggcattaatagaaatgacactggtcctatgatgaggtgc
tcctttgaagagactgttgatattcttcttgatgctgcagtgttcgcagagacggattat
ttaagaggtgtgacagaaaatataatgttaggacaacttgcaccaattggaacaggagat
tgtgccctgtatctcaatgatgagatgctgaagaatgccattgaactgcagctgcccagt
tacatggatggtcttgattttggtatgacaccgtctcgttctccagtatcaggaacacca
tatcacgagggcatgatgtcccctaattatttgttgagcccaaatcttcggttgtcgcca
atttcagatgctcagttttctccatatgttggaggaatggcattctctcctacttcctct
ccaggctacagcccatcatcccctggatacagcccttcctcgcctggatacagccccact
tctcctgggtacagtcccacctcaccagggtatagccccacttctcctgggtacagtccc
acctctccgacatatagtcctagttctcctggctatagtcccaccagtccagcttactct
cctacgagtccatcatactcaccaacctctcccagctacagccccacctcaccaagctac
agtcccacctcaccaagctacagccccacttcccctgcttacagccccacttcccccgct
tacagccccacttcccctgcatatagccccacttccccatcttacagtcccacgtctcct
tcatacagcccaacttcgccctcctacagcccaacttcgccctcctacagcccaacttct
ccctcctacagccccacatctccatcctacagccctacctcgccagcctacagcccaact
tctcctggttacagcccaacctctcccagttatagtccaacctcgcccagttacagccct
acatctccaagctataatcctcagtctgccaagtacagtccgtcgtcagcttactctcca
agcagtccaagattgtcaccatctagtccatacagtcctacctctccgaactacagccca
acctcaccatcatattcacccacatctccatcgtactctccctcaagccccacatacagt
ccgggcagcccattgacttctggagtgagcccagactatagcccgagttcccctcagtat
agtccaagtgctggatactcacctagtcaaccaggttactcgccatcatctactagccag
tag

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