KEGG   Malus domestica (apple): 103400813
Entry
103400813         CDS       T03194                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
  KO
K10752  histone-binding protein RBBP4
Organism
mdm  Malus domestica (apple)
Pathway
mdm03082  ATP-dependent chromatin remodeling
mdm03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103400813
   03083 Polycomb repressive complex
    103400813
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mdm03036]
    103400813
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     103400813
  Histone modification proteins
   HAT complexes
    HATB complex
     103400813
   HDAC complexes
    Sin3A-HDAC complex
     103400813
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     103400813
    PRC2.2
     103400813
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     103400813
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103400813
  Chromatin remodeling factors
   NuRD complex
    103400813
   NuRF complex
    103400813
   NuRF complex (fruit fly)
    103400813
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz CAF1C_H4-bd WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_EIPR1 WD40_WDHD1_1st Beta-prop_RIG_2nd WDR55 Beta-prop_EML Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_RFWD3 ANAPC4_WD40 eIF2A Beta-prop_SPT8 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 103400813
NCBI-ProteinID: XP_008337707
LinkDB
Position
15:complement(join(16438392..16438493,16438898..16438997,16439624..16439697,16439893..16439967,16440079..16440190,16440329..16440402,16440820..16440901,16441074..16441287,16441592..16441667,16441865..16441939,16442052..16442117,16442398..16442460,16442541..16442627,16442890..16442953,16443195..16443427))
AA seq 498 aa
MDAQSQQQAGPVKKKETRGRKPKPKEEKKDDHQQQAKLKKSQQNATVDDKYTQWKSLVPI
LYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRV
AAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ
PNRHAVLGATTSRPDLILTGHQDNAEFALALCPTEPYVLSGGKDKTVVLWSIQDHIAAST
TDPAATKSPGSIIKNSKSGDGNDKATDGPTVAPRGIYYGHEDTVEDVAFCPSSSQEFCSV
GDDSCLILWDARVGSSPAVKVEKAHDADVHCVDWNPLNDNLILTGSADNSVRLFDRRNLT
SEGVGAPIYKFEGHKAAVLCVQWCPDKSSVFGSSAEDGLLNIWDYEKVSKKERTPKGPTS
PPGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEV
LAELEKFKSHVVSCSSKP
NT seq 1497 nt   +upstreamnt  +downstreamnt
atggacgctcagtcgcagcagcaagccggaccggtgaagaagaaggagactcggggccgg
aagcccaagcccaaggaagagaagaaagacgaccaccaacagcaagccaagctgaagaag
tcgcagcagaacgccaccgtcgacgacaagtacactcagtggaagtccctcgtcccgatc
ctctacgactggctcgccaaccacaatctcgtctggccctccctctcttgccggtgggga
cctcagctcgagcaagctacttacaagaatcgccagcgtctctacctttccgagcagact
gatggcagtgttccaaatactctggttattgcaaactgtgaggttgtcaagccgagagtt
gccgctgcagagcatatatctcagttcaatgaggaagcccgctcaccatttgtgaagaag
tacaagaccatcatacatcctggagaggtaaacagaatcagagaacttccacagaacact
aagatagtggccacacataccgacagtcctgatgttctaatttgggatgttgaagctcaa
cctaaccgtcatgctgtccttggagctacaacctcgcgtccagatttgattttgactgga
catcaagataatgctgaatttgctcttgcattgtgtccaactgagccctacgtgctctct
ggagggaaggacaaaacagtggttttgtggagtattcaggaccatatagcagcctctacc
actgatccagctgcaaccaagtctccaggatcaatcattaaaaactcaaagtccggggat
ggtaatgataaagctactgatggccctactgttgcacctcggggaatctactatgggcat
gaggacacagttgaagatgtagcattttgcccttcaagttcacaggagttctgtagtgtt
ggcgacgattcctgcctcatattatgggatgcgcgtgttggctctagccctgctgtaaag
gttgaaaaagctcatgatgctgatgttcactgtgttgattggaatccccttaatgataac
cttattttaacagggtcagcagataattcagttcgcttgtttgatcgccggaatctcact
tctgaaggagttggggcacctatatataaatttgagggtcataaagcagctgttctttgt
gttcagtggtgtccagacaaatcgtctgtctttggaagttctgcagaggatggtctttta
aacatttgggattatgagaaggtcagtaagaaggagcgaactccaaaaggcccaacttca
ccacctggtctgtttttccagcatgctgggcacagggacaaagttgttgatttccattgg
aatgcatctgatccgtggactgttgtcagtgtgtctgatgactgtgaaagtactggcgga
gggggcacattgcagatatggagaatgagtgatctgatctacaggcccgaagaggaggtt
ctggcagagcttgagaagttcaagtcccatgttgtttcctgttcttcaaagccttga

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