Malus domestica (apple): 103400919
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Entry
103400919 CDS
T03194
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103400919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103400919
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103400919
mRNA degradation factors
5'-3' decay
Lsm complex
103400919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
103400919
NCBI-ProteinID:
XP_008337833
LinkDB
All DBs
Position
15:complement(join(17748313..17748390,17748867..17748929,17749034..17749149,17749261..17749329,17750078..17750138))
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AA seq
128 aa
AA seq
DB search
MSWAGAEDTFLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELELDKEELPPHMTLVPEAEIKRAQKAERDATDLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggctggagcagaagatactttcctttccacttctcttgcaacctatctcgac
aaaaagcttcttgtattattgcgagatggacgaaagttgttgggattgctacggtctttt
gatcagtttgctaatgttgttcttgaaggcgcatgtgaacgagtaattgtgggtgacctt
tattgtgacatcccattaggtctgtatgttatccgtggggagaatgtcgtcttaattggg
gagctggaattggataaggaagagcttcccccgcatatgactttggtaccagaagctgag
ataaaaagggctcagaaagcagagagggatgcaacagatttaaaaggctccatgagaaaa
agaatggagtttctcgattttgattaa
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