KEGG   Malus domestica (apple): 103401724
Entry
103401724         CDS       T03194                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
mdm  Malus domestica (apple)
Pathway
mdm03030  DNA replication
mdm03410  Base excision repair
mdm03420  Nucleotide excision repair
mdm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103401724
   03410 Base excision repair
    103401724
   03420 Nucleotide excision repair
    103401724
   03430 Mismatch repair
    103401724
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mdm03032]
    103401724
   03036 Chromosome and associated proteins [BR:mdm03036]
    103401724
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103401724
DNA replication proteins [BR:mdm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103401724
  DNA Replication Termination Factors
   ELG1-RFC complex
    103401724
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103401724
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103401724
  Check point factors
   HRAD17(Rad24)-RFC complex
    103401724
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 AAA_16 RuvB_N Mg_chelatase AAA_11 AAA_assoc_2 AAA_5 DUF3802 AAA_14 AAA_24 SLFN-g3_helicase nSTAND3 ResIII PhoH AAA_30 AAA_28 AAA_7 AAA_19 DNAX_ATPase_lid Ribophorin_II AAA_2 AAA_18 Gp44_lid NPHP3_N DUF815 AAA_25 RNA_helicase Parvo_NS1 CPG4 bpMoxR IstB_IS21 TIP49_C TIP49 ABC_tran ATPase_2 NB-ARC AAA_17
Other DBs
NCBI-GeneID: 103401724
NCBI-ProteinID: XP_008338669
LinkDB
Position
15:join(41140192..41140235,41140352..41140430,41140534..41140613,41141099..41141221,41141321..41141390,41141462..41141535,41141968..41142088,41142205..41142267,41142852..41142911,41143328..41143453,41143552..41143635,41143785..41143880)
AA seq 339 aa
MAPLVQSSQPWVEKYRPRQVKDVAQQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRPGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDIMI
TRVLHICQEEGLNLDPEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKELISVSGVV
PEEVVEAFFSACRGDNFDLANKEVNNVIAEGYPVSQMLSQLFEVVVQADDILDEQKARIC
KKLGEADKCLVDGADEYLQLLDVASSMMRAVCNMQEDFS
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccactggttcagagctctcagccatgggtcgaaaaatatcggccgaggcaagtg
aaagatgtggcgcagcaggacgaggtggtccgagtcctcaccaacaccctcgagacatca
aattgtcctcacatgctcttctatggtccgccgggtactggaaaaaccaccaccgctctc
gccatcgctcaccagctttacggacctgaactctacaagtctagagtgctggagctcaat
gctagtgatgatcgtgggatcaatgttgttcggacaaagatcaaagattttgctgctgtt
gctgtgggtactaatcaacgtccagggggttacccgtgtccaccatttaagatcataatc
cttgacgaggcagattcaatgacagaagatgctcagaatgccctaagacgtacaatggaa
actcactccaaagtcacccgattcttttttatatgcaattatatcagcaggatcatagag
ccacttgcttcgagatgtgcaaagttcaggtttaagccactttcagaagatatcatgatc
acccgcgtattgcatatttgccaagaagaaggccttaacctggatccagaggccctgtca
acactaagctctatctcacaaggtgatcttcgtcgggctattacatacttgcagtcagct
gctcgcttatttggatcttctatttcttcaaaggagctgattagtgtgtctggggtagtc
ccagaggaggttgttgaggcatttttctctgcgtgcaggggtgataactttgacttggca
aacaaggaagtcaacaatgtaattgcagagggatatccggtctctcaaatgctttcacag
ttatttgaggtggtggttcaggcagatgacatattagatgaacagaaggctagaatatgc
aagaaattgggcgaagcagataagtgtcttgtggatggtgctgacgagtacttgcagctg
cttgacgtggccagcagtatgatgcgagctgtttgtaacatgcaggaagatttctcttag

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