Malus domestica (apple): 103401998
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Entry
103401998 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103401998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103401998
03009 Ribosome biogenesis [BR:
mdm03009
]
103401998
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103401998
Spliceosome [BR:
mdm03041
]
Complex A
U1 snRNP components
U1 related factors
103401998
Complex B
103401998
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
Pre-60S particles
Helicases
103401998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Transformer
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103401998
NCBI-ProteinID:
XP_008338960
LinkDB
All DBs
Position
16:join(10548343..10549548,10549670..10549861,10550246..10550314,10550839..10551108,10551212..10551562,10552381..10552658,10552824..10553904)
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AA seq
1148 aa
AA seq
DB search
MATEEPAGPRYAPDDPTLPNPWKGLIDGSTGLLYYWNPETNVTQYEKPASLPPPLPSGLP
PATSTPKLAAIPVAHSVQPKGVMPQDGQQITQAPQQHGSQVSQFSQQHGHLMAQQMNPTS
YAQQQGSQMAQPGHQQSSLLGQAMQQHGQMMQHLGQQMPQPQVHQGQQMPQQLGQHTPQG
HASQGQQRLQQLGQHTPQSHGSQMHPFAHQQMHYRPYQQSIPPQGQQSSQPQTLHSAQAQ
PLANQQEYKAAFPQREEDDFQQRNQIGVSPSRFQQAGASSVQNLPTGTNPVQMPQRSVHQ
GPTQQFGGPLGNMQHPSSFGHLQQPGADLAHHQHGSRFQSQMDPAMIHGQQSNVPPVGLR
MGHENNFHGRGGNDYYFNSNNEGTTGPQQPKLASIPIAKSQQEMSGGPPFQTATPGHSMH
NVYSHATGAPPFPNNSLVKPPYVRPTSLTSLSPVEVYRQQHEVTASGDNVPAPFMTFEDT
GFPPEILREIHAAGFASPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLMPAFILLRQR
HNNSQNGPTVLVLAPTRELATQIQDEVLKFGRASRVSCTCLYGGALKGPQLKELDRGADI
VVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVDQIPPHRQTLMYTA
TWPKEVRKIASDLLVNPVQVNIGSVNELAANKSITQYVEVVPQMEKQRRLEQILRSQEQG
SKIIVFCSTKRLCDQIARSIGRTFGAAAIHGDKSQGERDWVLNQFRSGKSPVLVATDVAA
RGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAADLIKVLEG
ANQQVPPEVREIALRGGPGFGKDRNPMNRFDSGGPVNGAAGRWDSGGRDGIRDGGFGGRG
SMRDGGFGGRGGFGGRGGMRDGNFGGRGSMRDGNFGGRGGPRDSAGSGRGGRGDFFSGPG
NRGRGFGGPGGGNVGRGRNGSGPQDRYNSMDGRGGRGRGRFDNRVDFPDRSRGRNYSRSP
DRVRTWDINRSRSRSRSRSISRSRSRSRSRSWSRGRSRSYSHSRSHSRNRSRSPSYERYE
RPPRVSKFDMKDPVPESVVPPVPEMVPTSPETQVNVYPDTKPNLPVVEQTGLVDTQGGGG
DPSHHSLI
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaggagccggctggtccacggtatgcgccagatgatcctacacttcctaat
ccgtggaagggtttgattgatggtagcacgggtttgttatactactggaatcctgaaact
aacgttacccagtatgaaaaaccggcttctttgcctccgcccttgccatcaggcctgcct
cctgctacttccacaccaaagctggctgcaattcctgttgctcattcagtgcaaccgaag
ggagtgatgcctcaggatggacagcagataacgcaagctccacaacagcacgggtcgcaa
gtgagccagttttctcaacagcatggacatctaatggcacaacagatgaatccgacatca
tatgctcaacagcagggctcacaaatggctcaacctggacatcaacagagttcactattg
ggacaggccatgcaacagcatgggcaaatgatgcagcatctgggtcagcaaatgccccag
ccgcaagtgcatcaagggcagcaaatgcctcagcaactgggacaacacacaccacagggt
catgcgtcacaagggcagcaaaggcttcaacaactgggacaacacacaccacagagtcat
gggtcacaaatgcatccgtttgcacatcagcagatgcattataggccttatcagcaaagc
attcctccccaagggcaacagagttcacaaccgcaaactctgcatagtgcacaagcgcaa
ccactggcaaatcaacaagaatataaagctgcattcccccagagggaggaagatgatttt
caacaaagaaatcaaattggtgtttctccatcccggtttcaacaagcgggagcctcatct
gtgcagaatcttcctactgggaccaatccagtacaaatgccacagaggtctgttcatcaa
ggcccaacccaacaatttggcggccccttgggaaacatgcaacatccttcctcttttggt
cacttgcagcaaccaggggctgatttggctcaccatcaacatggttctaggttccaaagt
caaatggacccagcaatgatacacggtcagcagtcaaatgtgcctcctgttggattaaga
atgggtcatgaaaataatttccatggtcgaggtggaaatgactattacttcaatagtaac
aatgaagggacgacaggtcctcagcagcccaagcttgcatctattccgattgctaaaagc
cagcaggagatgagtggtggccctccatttcaaactgctacacctggtcattccatgcat
aacgtgtacagtcatgcaacaggtgctccaccattcccaaataactctttggtgaagccc
ccttatgtcagacctacaagtcttactagtctctcacctgttgaagtttatcgtcaacaa
catgaagttactgcatcgggtgacaatgtacctgcaccattcatgacatttgaagacact
ggttttcctccagagatattgagagagattcatgctgctggcttcgcatctcccacgcca
attcaggcacaaacatggccaattgctcttcaaagtagggatatagttgcaattgcaaaa
actggttccggaaaaactttgggctatttgatgcctgcattcattcttcttagacaacgc
cataataattctcagaatggcccaacagtcctggttttggccccaacacgggagcttgca
acacagatacaagatgaggttttgaaatttgggcgagcttctagggtatcttgcacgtgc
ctgtatggtggagctctgaagggccctcagctaaaagagttagatcgtggagcagacata
gtggtggcaactcctggtcgtcttaatgacatactggaaatgaagaaaattgattttcgg
caagtttctctacttgtacttgatgaagcagatcgaatgcttgacatgggttttgaacct
caaatccgtaaaatcgtggatcaaatacccccgcacagacaaactcttatgtacacagca
acatggcccaaagaagtaagaaagatagcaagtgatcttcttgttaatcctgtacaagtg
aatattggcagcgttaatgagcttgctgcaaacaagtctatcacacagtacgttgaagtt
gtcccacaaatggagaagcaacggcgtttggagcagatcctgagatcccaagaacaaggt
tctaagatcattgtcttttgttccaccaagaggttgtgtgatcagattgcacgtagtatt
ggacgcacttttggggctgctgcaattcacggggacaagtctcaaggtgagcgagactgg
gttttaaatcagttccggagtggaaaatccccagtattagttgccactgacgttgctgct
cgtgggcttgacatcaaagatataagggtggtggtaaactatgatttccctactggtgtt
gaagactatgttcaccgaattggaagaactgggagggctggcgcaacgggggtgtcatac
acctttttctctgagcaagactggaaatatgcagctgatttgattaaagttctggaggga
gctaaccagcaagtgcctccagaggtgcgagagattgctctacgtggtgggcctggtttt
ggcaaggataggaatccaatgaaccgttttgattctggtgggcctgttaatggtgctgct
ggccgttgggattccggcggccgtgatggaattagggatgggggttttggtggtcgtggc
agtatgagggatgggggctttggaggtcgtggtggttttggtggtcgtggcggcatgcga
gatggcaactttggcggtcgtggcagcatgcgagatggcaactttggcggtcgtgggggc
cctagggacagtgctggtagcggccgtggtgggagaggcgatttcttttctgggcctgga
aacagggggcgaggatttggtggtcctggtggtggtaatgttggtcggggtagaaatggc
agtggcccacaagatcggtacaacagtatggatggccgtgggggacgtggacggggacga
tttgataatagagttgattttcctgacaggagcagaggcaggaactatagccgtagccct
gacagagttcgaacatgggatattaacagaagcagaagccggagtcgaagccgcagcatt
agccggagtaggagtcggagtcgtagccggagctggtcccgtggccgtagccgcagctac
agccatagccgaagtcatagtcgcaaccgtagtcggagccccagttatgaaagatatgag
aggccgccacgcgtgtcaaaatttgatatgaaggatcctgttcccgaatctgtggttcca
cctgtaccagagatggttcctacgtccccagagacacaagtcaatgtatatccagacacc
aagccgaatctgccagtggttgagcaaacggggctagtggatacacagggcggaggagga
gacccttcccatcactcattgatttaa
DBGET
integrated database retrieval system
