Malus domestica (apple): 103402176
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Entry
103402176 CDS
T03194
Name
(RefSeq) ATP-dependent RNA helicase DEAH13-like isoform X1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mdm03009
]
103402176
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103402176
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
90S particles
Helicases
103402176
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
AAA_22
nSTAND3
ResIII
ATPase
AAA_19
Motif
Other DBs
NCBI-GeneID:
103402176
NCBI-ProteinID:
XP_008339136
LinkDB
All DBs
Position
05:complement(join(3512134..3512949,3513021..3513134,3513813..3514043,3514150..3514395,3514806..3515201,3515287..3515347,3515445..3515494,3515592..3515666,3515748..3515825,3515925..3516011))
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AA seq
717 aa
AA seq
DB search
MELCLGDGGGDSNALVLPAKRNKRKGTNQECGKPSKRRKAPTVSKSQRRRLKKLEECGKP
NKTKAPAVGKSQQRKLKKLDDEKEKALSISKSIEALEKYKLPETAYSLLQSSKNIGKVES
KKEKCQKGVLFSKAGFEAFVTDPQPFNKIDTCSESEPEVEKTLSWRDIGKNDQVQSKILQ
KEIQKKTTFSLDSSQGQVCGRGQGVNGGTAATSSVIENAISNKLDMSLQQDTNISPTSCV
NCDGEKSKTDRVKEMPKANISRVSKSSISPALRPLISPTIVHVSRPKEVESTRKDLPIIM
MEQEVMEAVNDHSTVIICGETGCGKTTQVPQFLFEAGFGSSSSSARSGMIGVTQPRRVAV
LATAKRVAYELGVRLGKEVGFQVRYDKRIGESCSIKFMTDGILLRELQNDFLLKRYSVII
LDEAHERSLNTDILIGMLSRVICTREERYAEQRKEMHLGRTINPDQRIFPLKLVLMSATL
RVEDFISGKKLFHDPPPVIEVPTRQFPVSIHFSQRTKEKDYIEQAYKKVLAIHKRLPHGG
ILVFVTGQREVEYLCQKLRRASKAPSIKTSKGDTRSYASEVSELNSAEEIDMKEINEAFE
VHGSSVGHQTDRFSSIDEDQYDIDEGLDTCKGTTMRSYQFWNPLSLQLSHSCVQRISSRL
ADLLLCLPSTSTLKDSVLLGVSKQNSNGFASHYSPFRISWELFPTNHKIGSRRWRSG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggaactttgcttgggagatggcggcggtgatagcaacgccctcgtattgccagctaag
agaaacaaaaggaagggcaccaatcaggagtgtggaaaacccagtaaaagaagaaaagcg
ccaacggttagcaaatcccagcggaggaggctcaagaagttggaggagtgtggaaaaccc
aataaaacaaaagcaccagcggttggcaaatcccagcagaggaagctgaagaagttggac
gatgagaaggaaaaagccctttcaatctccaaaagcattgaggccttagagaaatataag
cttccagagactgcatattctcttctgcagtcttcgaagaacattggcaaggttgagtct
aaaaaggagaaatgtcaaaagggcgtactattttccaaagctggctttgaagctttcgtg
actgacccccaaccatttaacaagatagatacttgtagtgaaagtgaacctgaggtagaa
aaaaccctatcatggcgggatattggcaagaatgatcaggtgcagtcgaagatattacaa
aaagaaatccaaaagaagacaactttttcattggactcctctcaaggtcaagtttgtggc
agagggcaaggcgtcaatggcggaactgctgctacctcgtcagttattgaaaatgctatt
agcaacaaacttgacatgtctttgcaacaagacacaaacatttctcccacttcatgtgtg
aattgtgatggtgaaaaatcgaagacggaccgcgtaaaagagatgccaaaagcaaatatc
agcagggtgagtaaatcatcaatttctcctgcactgaggcctcttatttccccaaccata
gtgcatgtatcaaggcccaaggaagttgaaagcacaaggaaggatcttcctataataatg
atggagcaggaggtaatggaggctgtaaatgaccattccactgttattatatgcggagag
actggctgtggtaaaaccacccaagttcctcaatttctttttgaagctggctttggttct
agctcctcttctgcacgaagtggtatgattggtgttactcaacctcgccgtgttgcagtc
cttgctactgctaagcgtgtggcatatgagcttggtgtacgtttaggtaaagaggttggg
tttcaagtaaggtatgacaaaaggattggtgaaagttgctccatcaaattcatgacagat
ggaatattactacgggaacttcagaatgactttttgttgaagcgatactctgtcataatt
cttgatgaggctcatgagcggagcttgaacaccgacatacttattggaatgctttcacgt
gtaatttgtactcgtgaggaaagatatgcagagcagcgaaaggaaatgcatttgggaaga
actataaatcctgatcaacggatatttccattgaagcttgttctgatgagtgccaccttg
cgagtggaagacttcatttctggtaaaaagctttttcatgatcccccaccagttatagaa
gttcccaccagacagtttcctgtatccattcacttctcacagagaactaaggaaaaggat
tatattgagcaagcatataaaaaagtcttggcaattcacaagaggctgccacatgggggc
atactcgtctttgtcactgggcagagagaagtagagtacttgtgtcaaaaactacgtaga
gcttcaaaggcaccgagtataaaaacatccaaaggggataccaggagttatgccagtgaa
gtttctgaactaaattctgctgaggaaatagacatgaaggagattaatgaagcatttgag
gttcatggaagttcagtgggccatcaaactgatagatttagctctattgatgaagatcag
tatgatatagatgagggattagacacttgtaaaggcactacaatgcgttcttaccaattt
tggaatcccttgtctttacaattgtctcattcttgcgtacagagaatatctagtcgatta
gcggatcttcttctttgtttaccgtcaacttccaccctcaaggactcagtcttgcttggg
gtttcaaagcagaactcaaacggcttcgccagtcattactcaccattcaggatttcttgg
gagctgtttccaaccaaccacaagatcgggtcaaggcggtggaggagtgggtga
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