KEGG   Malus domestica (apple): 103402643
Entry
103402643         CDS       T03194                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103402643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103402643
   03012 Translation factors [BR:mdm03012]
    103402643
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103402643
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103402643
Translation factors [BR:mdm03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    103402643
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C dsrm DEAD HA2_N AAA_22 NACHT Dicer_dimer TFIIA nSTAND3 ATPase AAA_19 T2SSE ABC_tran
Other DBs
NCBI-GeneID: 103402643
NCBI-ProteinID: XP_008339610
UniProt: A0A498HIS0
LinkDB
Position
16:complement(join(2422912..2423379,2423586..2423696,2423771..2423923,2424008..2424067,2424368..2424673,2425096..2425244,2425370..2425439,2425778..2425981,2426372..2426566,2426841..2427113,2427196..2427363,2427535..2427665,2427741..2427900,2428006..2428194,2428460..2428555,2428664..2428909,2429239..2429326,2429401..2429558,2430194..2430631))
AA seq 1220 aa
MPFVFLLLLPPSPPSLQFPCWPSPSHPKPIASSSKPSLLAMKDRPPSSYGSVYVPPHHRL
RSVISTPNYTSPASIGSKLRENQTAAAALNRRSSTNGALAYYQTQQQQQLQQQEQFQKPK
LQHTSAYDDSVSEEGSDREVEFPSHPTQSPYSSDIDEWKRKLTMLLRDKAKQELVTREKK
DRRDFDKIAALASKMGLYSHLYSKVAVFSKVPLPNYRFDLDDRRPQREVTLPLGLLRRVE
SYLGEFLSQKSRTKESFQDLSFSRSNSSGSIATDEGLFEQPESFASSKGVMEKLLWRRSM
QLRDKQQAWQESPEGRKMLELRRSLPAYKEKDALLAAISRDQVVIISGETGCGKTTQIPQ
FILESEIEAVRGAVCSIICTQPRRISAMSVSERVASERGEKLGDSVGYKVRLEGMKGRDT
RLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILM
SATLDSELFSSYFGRAQIIHVPGFTYPVRTHFLEDVLEITGCKLTPYNQIDDYGQEKMWK
MSKQAPRKRKSQIVSVVEDALKAADFKGYSPQTRESLACWNPDSIGFYLIEYLLCNICES
DKPGAILVFMTGWDDINSLKEKLHANPLLGDPSRVLLLACHGSMASTEQRLIFDEPGDGV
RKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAG
RVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLNLGSISEFLSRALQSPEL
LAVQNAIEYLKIIGALDENENLTVLGHYLTMLPVEPKLGKMLLVGAIFNCLDPVLTIVSG
LSVRDPFLTPFDKKDLAEAAKSQFSRDNSDHLALVRAYEGWKVAERDFAGYDYCWKNFLS
AQSMKAIDSLRKEFLSLLRDTDLVDTNTTTHNAWSYDEHLIRAVICYGLYPGICSVVHNE
KSFSLKTMEDGQVLLYSNSVNARDSKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFG
GSFSKGDIDGHLKMLGGYLEFFMKPAIAEMYQCLKEELDELIQIKLLNPRMDTHSYHELL
SAVRLLLSEDQGEGRFVFGRQVLAPSKSKPSVVAAQPALVSRTESGPGGDNSKSQLQTLL
TRAGYNAPTYKTTQLKNSQFRATVEFNGMQIMGHPCNNKKSAEKDAAAEAIQWLVSGTQM
GHEYINHMSIMLKKSKKEHK
NT seq 3663 nt   +upstreamnt  +downstreamnt
atgccctttgttttcctcctcctcctccccccatctcctccgtctctgcaattcccttgc
tggccgtcgccttcgcatccaaaacccattgcctcctcctccaaaccctcactcctggcg
atgaaggaccggcctccttcctcgtacggctccgtctatgtccctccccaccaccgcctc
cgctccgtcatcagcacccccaattatacctcccctgcttcaatcggctccaagctccgc
gaaaaccagactgctgctgctgctctcaaccggaggagcagcaccaatggtgctctggcg
tactaccagactcagcagcagcagcagctgcagcaacaggagcagtttcagaagcccaag
cttcagcacacttctgcttacgacgacagcgtttccgaggaaggctccgatcgcgaagtt
gagttcccgtcgcatccgacacagagtccttactcatctgatattgatgagtggaaacgg
aaattaaccatgctgttacgtgacaaggcgaagcaagagttggttacaagggagaaaaaa
gatagacgcgactttgataaaatagctgctttggcaagcaaaatggggctttatagccat
ctatattcgaaagttgcagtgtttagtaaggttccactgccaaactacagatttgacctg
gatgataggcgccctcagagagaggtgaccttgcctcttgggttgctgaggagagttgag
agctatcttggagagttcctttcccagaagtctaggacaaaggaaagctttcaagatctt
tccttttctagatcaaacagtagtggcagcattgctactgacgaagggctttttgagcaa
ccagaatcatttgcgtcgagtaagggtgtgatggaaaaacttctttggcggagaagtatg
cagctgcgtgataagcaacaagcttggcaggaatctcctgaaggtagaaaaatgcttgaa
cttcgcagaagtcttcctgcttataaagagaaggatgcattattggcagcaatttcacgg
gatcaggttgttatcatatcaggtgaaactggctgtggcaagactactcaaattccacag
ttcattttagaatctgagatagaagctgttcgtggagctgtttgtagtattatatgtaca
cagcctagacgaatatctgctatgtctgtttctgaaagagttgcttcagagagaggagag
aaattgggtgactcggttgggtataaggttcggttagaaggtatgaagggaagggacact
cgccttctcttttgcaccactggcattttgttgagaagattactagttgatagaaatttg
aaaggtgtaactcatgtgattgtggatgaaattcatgaacgtggaatgaatgaagatttt
ctgcttattgtactcaaggatctccttcctcggcgaccagaactgaggttgattttgatg
agtgcaaccctagattctgaacttttctcatcctactttggtagggctcagataattcat
gttccaggttttacatatccagttcggactcattttctggaggatgttctggaaattacg
ggatgcaaattaactccatacaatcagattgatgattatggccaagaaaagatgtggaaa
atgagcaaacaggcaccaagaaagaggaaaagccaaattgtttctgttgttgaggatgca
cttaaagcagccgattttaaggggtatagtccacagactcgggagtctctagcatgttgg
aatcctgatagtatcggtttttatctgattgagtatctcttgtgcaatatctgtgagagt
gacaagcctggtgccattctagtttttatgactgggtgggatgacatcaattctctgaag
gaaaagttacatgccaatcctctattaggtgatccaagccgagtcttgttactagcatgc
catggttctatggcaagtactgagcagaggctaatatttgatgagcctggggatggagtg
aggaaaatagtgctggctactaatattgctgagacgagtatcacaatcaatgatgttgtt
tttgtacttgattgtggaaaggcaaaagagacttcatatgacgcactgaacaatactcct
tgtttgcttccttcctggatttccaaggtttctgctcaacaaagaagaggaagagcagga
cgtgtccagccaggggaatgttatcatctctatcctagatgtgtctatgatgcatttgca
gagtatcaattgccagagattttgaggacacctctgcagtctctctgtctgcaaataaaa
agtttaaacctcggaagcatttctgagttcttatctagggctctgcagtcaccagaatta
ctcgcggtgcaaaacgccatagagtatttaaagatcattggggccttggatgagaatgag
aatctgactgttttaggacactatcttactatgcttcctgttgagccaaaacttggaaag
atgctcttggtaggtgccatcttcaactgcctggatccagttttgactattgtttctggc
cttagtgtcagagatcctttccttactccatttgacaagaaagatcttgctgaggctgca
aaatctcagttctcccgggacaatagtgatcaccttgcacttgtgcgggcctatgagggc
tggaaggttgctgaaagagactttgctggatatgattattgctggaagaattttctttca
gcacaatcgatgaaagctattgattcccttaggaaggagttcctctctttgcttagggat
actgatcttgttgataccaacaccaccactcataatgcatggagttatgatgagcatctc
atccgtgcagttatttgctatggcctgtatcctggaatctgctctgttgtgcacaatgag
aagtcattttcgctgaaaaccatggaggatggccaggtgctgctatactcgaactctgtc
aatgctagggattctaaaattccatatccatggctggttttcaatgagaagataaaggtg
aactctgttttcctacgggattcaacagctgtgtctgactcagtgctcctcctatttggt
ggaagtttttcgaaaggggatattgatggacacttgaaaatgctgggaggatatttggaa
ttcttcatgaaacctgctatagcagaaatgtatcaatgcttaaaagaggaacttgatgag
ttaattcaaatcaaactactgaaccccaggatggacacacacagttatcatgaactcctt
tctgcagtgcggttgctgctctccgaggatcaaggtgaaggtagatttgtatttggccgc
caggtccttgcaccctcaaagtcaaagccatctgtggtggcagcacagccagccttggtt
tcaagaactgaaagtggacccgggggtgacaattccaagagtcagctccagacgttgctc
acacgagcaggatataatgcacccacgtacaaaaccacgcagctgaagaacagccagttc
cgagctacagtggagtttaacggaatgcaaattatgggccacccgtgtaacaacaagaag
agtgcagaaaaagatgcggcagcagaggccattcagtggctggtgagtggaacacaaatg
ggccatgagtacatcaatcatatgtcaatcatgttgaagaaaagcaaaaaggagcacaaa
taa

DBGET integrated database retrieval system