Malus domestica (apple): 103402965
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Entry
103402965 CDS
T03194
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103402965
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103402965
Spliceosome [BR:
mdm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103402965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH3_ISE2
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
Ski2_cyano_M
IstB_IS21
AAA_16
Motif
Other DBs
NCBI-GeneID:
103402965
NCBI-ProteinID:
XP_008339977
LinkDB
All DBs
Position
16:complement(join(5797600..5799840,5799946..5800126,5800543..5800661,5800811..5800897,5800986..5801094,5801201..5801314,5801428..5801603,5801690..5802190))
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AA seq
1175 aa
AA seq
DB search
MDTLSILTPSDIFTRLLPLSRASHPLPRHPTKTLGFCSPKPPPAHSPTSPRFRVRFQRPS
SAFPAKSQLYDADEEEEEDEYEEEEEDDEDVAADEYDDVTGDMSDGLEQSDDEIESSVAD
AEPSTRPEEFKWQRVEKLCGEVKVFGEEMIDDHELASIYDFRIDKFQRLAIQAFLRGSSV
VVSAPTSSGKTLIAEAAAVATVARRRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGD
SAVNKDAQVLVMTTEILRNMLYQSVGMASSGDGLFHVDVIVLDEVHYLSDMYRGTVWEEI
VIYCPKKVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSTKTSLLHLL
DKTGKHMNRRLSVDYLQLNASGTKSYKDDGSRRRGSRRRGNEMSYDDSNGNMSRRPLSKN
DINLIHRSQVPQITDTLWQLKTRDMLPAIWFIFSRKGCDAAVQYVQDITLLDDCEKSEVE
LALKRFRIKYPDAIRETAVKGLLHGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLA
AGINMPARTAIIASLSKRGDTGRVQLSPNELFQMAGRAGRRGIDEKGHVVLVQSPYEGAE
AGCKIVFAGLEPLVSQFTASYGMVLNLLAGAKVTHRSNEPDDTEASLSGRTLEEARKLVE
QSFGNYVGSNVMIAAKEELTRIQKEIETLSSEISDEAIDRRSRKILSGPAYKEIADLQEE
LRAEKRLRTELRRRMESQKMSSLRPLLEEFENGQLPFLCLQYKDSEGVQQSIPAVYLGKV
DTVNNSKLKHLVSVDDSFALNAVACEFEPNVVFEPSYYVALGSDNSWYLFTEKWIKTVYK
TGFPNVALALGDALPREIMSTLLDKTELKWEKLAESELGGFWNMEGSLETWSWSLNVPVL
NSLSEHDELLHKSEAYNEAVERYKDQRNKVSRLKKKISRTQGFREYKKIVDMAKFTEEKI
KRLKSRARRLTNRIEQIEPSGWKEFLQISNVIHETRALDINTHVIFPLGVTAAAIRGENE
LWLAMVLRNKILIGLKPPELAAVCASLVSEGIKVRPWKNNSYIFEPSSKVVDVVSFLDHQ
RSSFLELQEKHGVNKPCYLDTQFSGMVEAWVSGLTWREIMMDCAMDEGDLARLLRRTIDL
LAQIPKLPDIDPLLQSNAKTASNIMDRPPISELAG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggacactctctccatcctcacaccctccgacatcttcacgcgcctccttcctctcagc
cgcgcttcccatcccctcccccgccaccccaccaaaaccctagggttttgctcccccaaa
ccacctcccgcgcactctccgacctcaccgcgattccgagtcagattccagcgcccgagc
tccgccttccccgccaaatctcagctctacgatgccgatgaagaagaggaggaagacgag
tacgaagaggaggaggaggacgacgaggacgttgccgcggatgagtacgacgacgttact
ggggacatgtcggacggactcgagcagagcgacgacgaaattgagagttcggtggctgac
gcagagccgtcgactcggccggaggagttcaagtggcagagagtggagaagctctgcggc
gaagtcaaagtgttcggcgaggaaatgatagatgaccacgagctcgcttctatctacgat
ttccgaatcgataagtttcagagattagcgatacaagcgttcttgagaggttcgtcggtg
gtggtatcggcgccgacgagcagtggaaagactttgatagcggaagctgccgccgtcgca
acggtggctaggcggaggaggttgttctacacgactccacttaaggccttgtccaatcag
aagtttcgggaatttcgtgagacttttggcgatgacaatgtcggccttctcactggagat
tctgcggtaaataaagatgctcaggttttagttatgaccactgagatcttgcgcaacatg
ttgtatcagagtgtgggaatggcttcttctggggacggactttttcacgtagatgtcatt
gtcttggatgaagttcattatctgagtgacatgtatcggggtacagtgtgggaagaaatc
gttatatattgcccgaaaaaagttcaactcatatgtttgtcagcaacagtagcaaaccca
gatgaattggctggttggattggtcagattcatggtaaaactgaattggtaacttcatca
aagcgtccagtaccattgacttggcatttctcgacaaagacttctttgttgcatcttctt
gacaagacgggaaaacacatgaataggaggttgtcagtcgattatcttcaactcaatgct
tcaggaacaaaatcttacaaagacgatggctctagaaggaggggctcaagaagacgtgga
aatgagatgagttatgatgacagtaatggtaacatgtctagacgaccactgtcaaagaat
gacatcaacttaatacaccgttcgcaagtacctcaaattaccgatacattatggcaactt
aagactcgggatatgcttccagcaatatggtttatttttagtaggaaaggatgtgatgct
gctgttcagtatgttcaagatatcacgctcttggatgactgtgagaagagtgaggttgaa
ttagccttgaagaggttccgcatcaagtatcctgatgctatcagggagactgctgtgaaa
ggtttactgcatggggttgctgcgcatcatgctggctgtctacctttatggaaatcattc
atagaagagctgtttcagcgggggcttgttaaggtcgtctttgcaacagaaacacttgct
gcaggaatcaatatgcctgctaggacagccattattgcatccctcagcaaaagaggtgac
actggacgtgtccaattaagtccaaacgaactgtttcaaatggctgggcgtgctggacgt
agaggcattgatgaaaagggtcatgtagtgcttgttcaaagtccttatgaaggcgctgaa
gcaggttgcaagattgtttttgctggacttgaacctttggtctcgcagtttacagcttca
tatggaatggtgctgaatctacttgctggtgcaaaagttactcatagatcaaatgaacca
gatgacactgaagcctccctatcagggcgaactttggaagaagctagaaagttagttgag
caaagtttcggaaactatgttggcagcaatgttatgattgccgcaaaagaggagcttact
agaattcaaaaagagattgagacactgtcttcagagattagcgatgaagcaattgataga
aggagtaggaagatattatctggaccagcatataaggagattgcagatctacaagaggaa
ttaagagcagagaaacgactgaggaccgaacttcgaagaagaatggaatctcaaaaaatg
tcttcactacgaccgttgttagaggagtttgaaaacggacaattaccctttttgtgcttg
cagtacaaggattctgaaggagttcaacagtctatcccggctgtttatttggggaaagtt
gacacggtcaacaattcaaagctcaagcacttggtttctgttgatgattcatttgcatta
aatgcagtggcctgtgagtttgaaccaaatgtggttttcgaaccatcatattacgtggct
cttggttcagataattcctggtatttgtttacagaaaagtggattaaaacagtttataag
acgggtttcccaaacgttgctttagcgctaggagatgctttgcctcgggaaattatgagc
acgcttctggataagacggagctgaagtgggagaagcttgccgagtctgaacttggcggt
ttttggaacatggaaggatctcttgagacatggtcttggagtttgaatgttccagtcttg
aatagtctttctgaacatgacgagcttttgcataagtcagaagcatacaatgaagcagta
gaacgttacaaagatcaaagaaacaaggtttcacgtctgaagaagaagatctcgcgtacg
caaggcttcagagaatacaagaaaattgttgacatggccaagtttacggaggaaaagatt
aaaagattaaagagtagagcaaggcgtttgactaatcgaatagagcaaattgagccctcc
ggttggaaggagttcttgcagatcagcaatgtcatacacgagactcgagcattggatatc
aatacccatgtcatatttccacttggtgtaacagcagctgccattcggggagaaaacgaa
ctctggcttgccatggttcttcgaaacaaaatcttaataggtttgaagcccccagaactt
gctgccgtctgcgcaagtttagtatccgaagggatcaaagttcgtccttggaagaacaac
agctacatattcgaaccttcgagtaaagtagtcgacgtggtcagcttcttggatcatcag
agaagctcttttcttgagcttcaagaaaaacatggggtaaataaaccttgctatttggac
acacagttttcaggtatggttgaagcctgggtttctgggttgacttggagggaaatcatg
atggactgcgcgatggacgagggtgatttagcccgcctcctacggcgaaccatcgatctg
ctggcgcaaattcccaagttgccggatattgatccgctactgcagagtaatgcaaagacg
gcgtcaaatattatggaccgtcctccaattagtgagctggctggatga
DBGET
integrated database retrieval system
