KEGG   Malus domestica (apple): 103403149
Entry
103403149         CDS       T03194                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103403149
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103403149
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103403149
Spliceosome [BR:mdm03041]
 Complex C
  Other components
   Step II factors
    103403149
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N AAA_22 SLFN-g3_helicase AAA_19 AAA_30 Flavi_DEAD AAA_24 nSTAND3 T2SSE ATPase AAA_16 ABC_tran
Other DBs
NCBI-GeneID: 103403149
NCBI-ProteinID: XP_008340199
LinkDB
Position
16:join(8243431..8243436,8243532..8243670,8243836..8244057,8244155..8244231,8245041..8245326,8245651..8245815,8245943..8246088,8246192..8246283,8246674..8246785,8247274..8247451,8247583..8247812,8247901..8248077,8248297..8248368,8248494..8248670,8248792..8248853,8248958..8249110,8249195..8250794)
AA seq 1297 aa
MEKRGHTEPIDLDKTTATLEPEANSDGGLFVPGKDRVVFRPPERKSLLGLDVLAIAKREG
SKVNGGFKTPRERGANVVSSMEEDEKSESVISDEKGTDEPTAIRSHSRRRYREISGSETP
RTESTVTEEGKIDDMHENRYSREHLRGDVSSPSGSSHSVRSRTPKYDRDDRGNERRDYKG
RYDRDDRGSERREYQDGSRSERQRYSSNGNDYNRRREGSRYEQEYSGEYGRKRSRYEDSK
RTPGRSDWDDGRWEWEESPRRDNYPNTSRRHQPSPAPMLLGASPDARLVSPWLGGHTPGS
AASPWDHVSPSPAPIRASGYSVKSSSSKYGARSHQLTFSSESSQSFKDGEEDNLAEEHTY
EITESMRQEMEYNSDRAWYDREEGNTMFDTTDDSSLFYANDASFQKKEAELAKRLVRKDG
TKMSLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERRVILLVHDTKPPF
LDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQSQNKSRQRFWELAGSKLG
DILGVEKTAEQIDADTAAVGEDGEIDFKEDAKFAQHMKSGEAVSDFALSKTLSQQRQYLP
IFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQYLYEDGYTVNGIVGCTQPRRVAAMSV
AKRVSEEMETELGDKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLRDSDLDKYRVVVMDE
AHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNI
LFSKTPCEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERMEQLISSSKK
AVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKM
KVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTENAYLNELLPSPVPEIQR
TNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVE
FPLDPPLAKMLLMGDQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFSVPESDH
LTLYNVYQQWKQHQYRGDWCGDHFLHVKGLRKAREVRSQLLEILKTLKIPLTSCWPDTDL
VRKAICSSYFHNSARLKGVGEYVNCRTGMPCHLHPSSALYGMGCTPDYVVYHELILTAKE
YMQCATAVEPQWLAELGPMFFSVKDSDTSMLEHKKRQKEEKTAMEEEMENLRKTQAEEEK
ESKRKEREKRSKQQQQVSMPGLHKGSSTYLRPKKLGL
NT seq 3894 nt   +upstreamnt  +downstreamnt
atggagaaacgaggtcacactgaacctattgacctggacaagacaacggcgacgttggaa
cctgaggcgaatagcgatgggggattatttgtacctgggaaggatagagttgtttttaga
cctccagagaggaaatctctcctggggttagatgtccttgctattgccaaacgggaaggg
tctaaggttaacggtggattcaagaccccaagagaaagaggtgctaatgttgtctcatca
atggaggaagacgaaaaatcagagtctgtaatttcagatgaaaaaggtactgatgaaccc
actgctatacgaagtcactctcggaggcgatatcgggaaatatctgggagtgagacacca
cgcacagaaagtactgtaacagaagaaggaaaaattgatgatatgcacgagaatcgctac
tctagggaacatctgcgtggagatgtttcgtctcctagtggaagttcccacagtgtcagg
tctcggacccctaagtatgacagggatgatcgtggaaatgagagaagagattacaagggt
agatacgacagggatgaccgtggtagtgagagaagagagtatcaggatggtagtaggagt
gaaagacaaagatacagtagtaatggtaacgattataatcgtcgaagggaaggtagccga
tatgaacaagaatatagtggagaatatggaagaaagcggagtagatatgaagattcaaag
aggacacctggcagatctgactgggatgatgggagatgggaatgggaggagtcaccacga
cgtgataactaccctaataccagtaggcgacatcaaccatcaccggcacctatgctgctt
ggtgcctcacctgatgcacgactagtttccccatggttaggtggccatacacctggttct
gctgcttctccttgggatcatgtctctccctctccagctccaatacgtgcttctggatac
tcagtcaaatcttcaagttcgaaatatggtgcgaggtcccatcaacttactttttcttca
gaaagttcacaatcattcaaggatggggaagaagataatttggccgaagaacacacatac
gagattactgaaagcatgcgtcaagagatggaatacaattctgatcgtgcatggtatgat
agagaagaaggaaacacaatgtttgatacgactgatgactcgtccttgttttatgcaaac
gatgcttcttttcaaaagaaggaagcagagttggcgaaaaggctggtccgaaaagatgga
actaagatgtctcttgctcagagcaaaaagttgtctcaactcactgctgataatgctcag
tgggaggatcgtcaacttttaagatctggtgctgttagaggtaccgaggtgcagactgag
tttgatgatgaagaagaacggagagtcattcttcttgtccatgatacaaagcctcctttc
ctggatggcagggttgtttttaccaaacaagcagagcccataatgcctataaaggatccc
acatcggatatggccataatttcacgcaaagggtctactctggttagggaaatccatgag
aagcaaagtcagaacaaatcacgtcaacgtttctgggagcttgcaggttccaaactgggt
gatatccttggtgttgaaaaaacggcggagcagattgatgcggatactgctgcagtaggt
gaagatggtgaaattgatttcaaagaagatgcgaagtttgcacaacatatgaagagcggg
gaggctgtgagtgattttgcattgtcaaaaacactctcacagcaacgacaatatttgccc
atattttctgtgcgggatgagttattgcaggtaattcgagaaaatcaggttattgttgtt
gttggagaaactggttctggaaagacaactcaattgacacagtatctttatgaagatgga
tacacagtaaatggtatagtgggttgcacccaaccaaggcgtgtagcagccatgagtgtt
gcaaaaagagtaagtgaagagatggagactgagcttggtgataaagttggctatgctatt
cgttttgaggatgtgacggggccaaataccataataaagtacatgactgatggagtactt
ctgcgcgaaacgctcagagattctgatcttgacaaataccgtgtagttgtcatggacgaa
gcccatgaaaggtcactaaacacagatgtgctgtttggaattttgaaaaaagtggtggcc
caacgtcgtgattttaagctcattgtgacatctgcaactctaaatgctcagaaattttca
aatttctttgggagtgtaccaatttttcacattcctgggagaacgtttcctgtaaatatc
ttgttcagcaaaaccccttgtgaagattatgttgaaggtgcagtgaagcaggccatgaca
attcacatcacgagccctcccggtgatatcctcatcttcatgacaggccaagatgagatt
gaggcagcttgttatgcgcttgccgagcggatggaacaacttatctcgtcctccaaaaaa
gcagttccaaaactcttgatactccctatatattcacagttgcctgctgatttgcaagca
aagatatttcaaaaagctgaggatggagctcgtaaatgcattgtagcaaccaacattgct
gagacttctttgactgtggatggaatatattacgtgatcgatacgggctatggtaagatg
aaggtatacaatcctcgaatgggtatggatgctcttcaagtgtttcctgttagtcgtgca
gctgctgaccagcgtgctgggcgtgctggtagaactgggcctgggacatgttatcggctg
tacacggagaatgcatatctaaatgaattgctgcctagtcctgtgccagagattcagagg
actaaccttggtaatgtggtgttgttgctcaagagtcttaaggtcgagaacttgttagac
tttgatttcatggacccacctccacaggacaatattctcaactctatgtaccaattgtgg
gtcttaggtgctctgaacaatgtcggaggcttaactgaactaggctggaagatggtggag
ttcccattggaccccccgcttgctaagatgttattgatgggcgatcagcttggatgcctg
gatgaggttctgacaattgtgtctatgctttcggtgccatcagtgttctttaggcctaaa
gatagggcagaggagagcgatgctgcaagggagaagttctctgttccagaatctgaccac
ttgacgctgtataatgtctaccagcagtggaaacaacatcagtatcggggggactggtgt
ggagatcattttttgcatgttaaaggcttacgaaaggctagagaggtgaggtcccaactg
ctggagatcctgaagacgctaaaaattcctctaacatcctgttggcccgatactgatctt
gtgagaaaagctatatgctcctcgtacttccacaattctgcaagattgaagggagttggg
gagtatgtgaactgcaggaccgggatgccatgccatttacatccgagcagtgctctttac
ggtatggggtgcactccagattatgtggtttatcatgaactgattttgacggcaaaggag
tacatgcagtgcgccacagcggtggagccgcagtggttggccgagttggggcccatgttc
ttttctgtgaaggattcagatacatcgatgctggagcataagaagagacaaaaggaggag
aaaacagcgatggaggaggaaatggagaacctgaggaagactcaagcggaggaagagaaa
gaaagcaagcggaaggagagggaaaagagatcgaagcagcagcagcaagtctcgatgcca
ggtttgcacaagggatcttctacatatttgaggccaaagaaacttggcttgtaa

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