Malus domestica (apple): 103403153
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Entry
103403153 CDS
T03194
Name
(RefSeq) nuclear pore complex protein NUP54
KO
K14308
nuclear pore complex protein Nup54
Organism
mdm
Malus domestica (apple)
Pathway
mdm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103403153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103403153
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
103403153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Motif
Other DBs
NCBI-GeneID:
103403153
NCBI-ProteinID:
XP_008340202
LinkDB
All DBs
Position
16:complement(join(8279180..8279296,8279380..8279529,8279623..8279724,8280040..8280126,8280206..8280271,8280697..8280807,8280908..8280967,8281215..8281268,8281383..8281835))
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AA seq
399 aa
AA seq
DB search
MFGAQSSSSPFGTPSSTPAFGTPSSTPAFGTPSSTPAFGTPSSTPAFGTPSSTPSFFTPS
TPAFGTPSTSAFSAGGFGGSLFSTPFSSQTQQQQQQQQTPSFQQPQSAGGFGFQAPFSTP
QQPTPFPNSQLTTQMAPVAPLAFSLADRDIQAIVDAYKDEPGNPKYAFKHLLFSVTDPQF
RVKPAGVSDIMWAEAMAKLEGLESTDRERLWPQLVQGFKDLSQRLKLQDEVLLSDAERLQ
MTQSNVKMLQRHFQADTLPWIERMRQKEQGLQRRLLRVMRILEALEGKGFRLPLMKGEAE
LAEKLAAVTRQLKGSGAELSRRVQNLLTISRVQENSIGGGGLGYLPGSTKIHEQSLAAMQ
EVLQQQTEAVARLGNVLKRDIRDMEIIMAEDMETTQNGS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgttcggagctcaatcttcgtcgtcccccttcgggacgccgtcgtcgaccccagcgttc
ggcacgccgtcgtcgaccccagcgttcgggactccgtcgtcgaccccagcgttcgggact
ccgtcgtcgaccccggcattcggtacgccatcttcgaccccatcgttctttactccttcg
accccggcctttggaactccgtcgacgtctgcattttccgccggtggcttcggcggctcc
ttattcagcactccgttctcttctcaaactcagcagcaacagcaacagcagcaaacgccg
tcgtttcagcagcctcagtctgctggcggctttgggtttcaggctccgttctctacgccg
cagcagccgacgcccttccctaattctcaattgacgactcagatggctcctgtcgctcct
ctcgctttctctctcgccgatcgcgatattcaagcaattgttgatgcttacaaggacgag
cctggaaaccctaaatatgcttttaagcatttgctgtttagcgtaactgatccgcagttc
agggtgaagcctgctggtgtatcggatataatgtgggcagaggctatggcgaagcttgaa
ggtctggaaagtactgatagggaacgcctgtggcctcagcttgttcagggttttaaagat
ctctctcaacgactgaagctccaagatgaagtccttctttcagatgctgagagattgcaa
atgacccaaagcaacgtcaagatgcttcaaaggcattttcaagctgacactcttccttgg
atcgaaagaatgagacaaaaagaacaaggtcttcaaaggcgccttttgagggtgatgaga
atactggaggcactagagggcaagggtttccgactgcctttaatgaaaggtgaagcagag
ttggctgagaagttagctgcagttacaagacagctgaaaggatcaggagctgagctttct
aggagggtacaaaacctattaaccatatcccgtgtccaagagaattctattggtggcggt
ggtttaggttatcttccaggatcaaccaaaatacatgaacagagtcttgctgctatgcaa
gaggtgttacagcagcagacggaagccgttgcgagactcggcaatgttttgaagcgagat
attagggatatggagattataatggccgaggatatggaaacaacacagaacgggagctaa
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