Malus domestica (apple): 103403406
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Entry
103403406 CDS
T03194
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03013
Nucleocytoplasmic transport
mdm03015
mRNA surveillance pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103403406
09122 Translation
03013 Nucleocytoplasmic transport
103403406
03015 mRNA surveillance pathway
103403406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103403406
03041 Spliceosome [BR:
mdm03041
]
103403406
03009 Ribosome biogenesis [BR:
mdm03009
]
103403406
03012 Translation factors [BR:
mdm03012
]
103403406
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103403406
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103403406
mRNA cycle factors
Stress granule specific factors
103403406
Spliceosome [BR:
mdm03041
]
Complex C
Other components
EJC/TREX
103403406
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
90S particles
Helicases
103403406
Translation factors [BR:
mdm03012
]
Eukaryotic type
Initiation factors
eIF-4
103403406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
Helicase_RecD
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
103403406
NCBI-ProteinID:
XP_008340453
LinkDB
All DBs
Position
16:join(377533..377822,377929..378169,378283..378363,378488..378595,378687..378806,379142..379309,379777..379863,379967..380080)
Genome browser
AA seq
402 aa
AA seq
DB search
MTEASARRGGGMGDEKLEFVTSDGIEPIMTFDQMGLRDDLLRGVYNYGFEKPSAIQQRAV
RPIIEGRDVIAQAQSGTGKTSMIALTVCQLVDTSSREVQALILSPTRELAAQTEKVILAI
GNFINIQAHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDES
DEMLSRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTNKFMTEPVRILVKRDELTLE
GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHG
DMPQKERDAIMAEFRGGNTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSG
RFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggcatcggcgagacgcggcggaggaatgggtgacgagaagctggagttcgta
acttccgacgggattgagcccatcatgaccttcgatcagatgggtttaagggacgatctc
ctccgaggcgtctacaactacggctttgagaagccatccgccatccagcaacgagccgtc
aggcccatcattgagggccgcgacgtcatcgcccaggcccagtccggtaccggcaagacc
tccatgattgccctcaccgtctgccagctcgtcgacacctcctcccgggaggttcaggct
ttgatattgtctccgacgagggaattggcggcgcagacggagaaggtgatattagcaatt
gggaatttcataaatatacaagctcattcttgcattggaggcaaaagcgtgggtgaggat
atccgaaagctcgagtatggcgttcatgtggtatctggaactcctggcagagtctgtgat
atgatcaaaagaagaactctccgaactcgagcaatcaaattattagttcttgatgaatct
gatgaaatgttgagcagaggattcaaggatcagatttatgatgtctacagatatcttcct
cctgagctccaggtttgcttgatttctgctacacttcctcatgaaattttggagatgacc
aacaagtttatgactgaacctgtaaggatccttgttaaacgtgatgagttgacgttggag
ggaatcaagcaatttttcgtggctgtcgaaagagaggaatggaagtttgatactctttgt
gatctatatgatacccttacgattacacaagctgttattttctgcaacaccaagcgaaag
gtggactggctcaccgaaaagatgaggagtaataactttactgtctctgcaatgcatgga
gatatgcctcagaaggaaagagatgctattatggctgagtttcgtggtggtaatactcgt
gtcctgatcacaaccgatgtttgggcccggggccttgacgttcagcaggtttctttggtt
atcaattatgatctcccaaacaatcgagagctatacattcatcgaattggtcgttctgga
cgttttgggcgcaagggtgtggcaataaactttgtgaaaagtgatgatattaagattcta
agagacattgagcagtattacagtacgcagattgacgaaatgccgatgaatgttgcggat
ttgatatga
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