Malus domestica (apple): 103404318
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Entry
103404318 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103404318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103404318
03009 Ribosome biogenesis [BR:
mdm03009
]
103404318
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103404318
Spliceosome [BR:
mdm03041
]
Complex A
U1 snRNP components
U1 related factors
103404318
Complex B
103404318
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
Pre-60S particles
Helicases
103404318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103404318
NCBI-ProteinID:
XP_008341438
LinkDB
All DBs
Position
17:complement(join(2348511..2348742,2348883..2349224,2349557..2349834,2350101..2350451,2351045..2351314,2351833..2351901,2352484..2352630,2352738..2353052))
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AA seq
667 aa
AA seq
DB search
MAATATAAGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYDRPTSSAPPSKPSS
AQSISSSVHVQQSSQGQRRPDEGDDRYSRGSNGGSKFDTGSRTQQTARSATVSHNTPSGT
LSSHGGSSVKGNGSDTGSGLSAEAYSLRHEISVVGDNVPPPFTSFESTGFPSEILREVQS
AGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRTRNNPQMGPTVLV
LSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADVVVATPGRLNDIL
EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEIPARRQTLMYTATWPKEVRKIAAD
LLVKPVQVNIGNVDELVANKSITQYVEVLTSMEKHRRLEQILRSQEPGSKIIIFCSTKKM
CDQLSRNLTRQFGAAAIHGDKSQSERDYVLNQFRSGRTPILVATDVAARGLDIKDIRVVI
NYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQCVPPEVREL
ASRGGGMNRFRRWGSGPSGGRDGGRGQNDSSYGGRDGGRGGGYGFTPSSGRYGQSNGYDR
GRSPSPVKASGYRARSRSPERFDKALPTGGGSAGGWSFHKAMMERERSSPPRRRSAEEAE
EGMIHPE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcaactgctgctggtcctcgatatgctccggaggacccaactctcccc
aaaccatggagaggtctggttgatggtaaaactgggtatctttacttctggaacccggag
accaacgttacccaatatgataggccaacgagctcagctcctccatcaaagccctcttct
gcacagtctataagctcctcggttcatgttcaacaatcttcacaagggcaacgtcgtcct
gatgagggagatgataggtatagcagaggcagcaatggtggctcgaaatttgacacagga
tcaagaactcagcagactgcaagaagtgcaacagtttctcataataccccaagtgggaca
ctaagttcacatggaggatcttctgtgaaaggaaatggatcagacactggaagtggtttg
tctgctgaggcttatagtctccgccatgaaatatcagttgttggtgataatgtgcctcca
ccattcacttcatttgaatctactggcttcccatctgagattcttagagaggtacaaagt
gcaggtttctctgccccaactccaattcaagcacaatcttggccggttgctcttcaaagt
agagatatagtagccattgctaaaactggttcggggaagaccttggggtatttgcttcca
ggattcatccatctcaagcgcacccgtaataaccctcagatgggtccaactgtattggtt
ttatcaccaactagggagctggcaacacagattcaagatgaggcagtgaagtttgggaag
tcatcaaggatatcttgtgtgtgtttgtatggaggagctccaaagggaccacagttgaga
gatattgaccgaggagcagatgttgtggttgccactcctggccgcttgaatgatattctt
gaaatgaagagaatcagtctccatcaagtttcttatttagtgctggatgaggctgaccgg
atgctggacatggggtttgaaccacaaataaggaagattgtgaaggagatacctgctcgt
cgccagaccctaatgtataccgcaacttggccaaaggaggttcggaagattgcagcggat
ctactggtcaaacctgttcaggttaacattggcaatgttgatgaactggttgcgaataag
tctatcacacagtacgttgaagtactgacctcaatggagaagcacagacgactggagcag
atattgcgatcccaagagccagggtctaagataattatcttttgttcaactaagaagatg
tgcgatcaactttctcgcaatctaacccgccagtttggagctgctgcaattcatggcgac
aaatctcagagtgagagggattatgtgttgaatcaatttcgctctgggaggactccaatt
cttgtagcaactgacgttgcagctcgaggattggacataaaggacataagggtggttatc
aactacgacttccctactggagtagaggattatgttcacaggattgggagaactggaaga
gcgggcgccactggcctggcttatacattttttggtgatcaggatgccaagtatgcatca
gatctcatcaaagttttggaaggtgcaaatcagtgtgtccccccagaagttcgtgagctg
gcttcccgtggtggtgggatgaacaggttcagacgttggggttctgggcccagtggtggt
cgtgatgggggtcgtgggcaaaatgattcaagttatggtggaagggatggtggaagggga
ggaggatatggatttactccctcctctggcaggtatggtcaatccaatgggtatgacaga
ggccgcagtcccagccctgtcaaggcgtcaggatatagagcccgtagccgtagtcctgag
aggtttgacaaagctctgccaacaggtggtggctctgcaggtggttggagtttccacaaa
gcaatgatggaaagggagcggtcatcgcctccacgtagacgcagtgctgaagaagctgag
gagggaatgatacatccagagtaa
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