Malus domestica (apple): 103404411
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Entry
103404411 CDS
T03194
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103404411
Enzymes [BR:
mdm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103404411
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103404411
NCBI-ProteinID:
XP_008341537
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All DBs
Position
17:join(3335890..3336101,3336389..3337073,3337176..3337418,3337512..3337736)
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AA seq
454 aa
AA seq
DB search
MASKLNLALLMISFCMLVPSLKAETQNDTLNIAEFDSVWQQRALKAQKAALKAYQPNPEQ
VTEDFNESVEMTIIEDDHDDDHAAGNSTGRHLLGKRYTGPCKATNPIDRCWRCQANWADN
RKHLASCVKGFGRKTRGGKKGAYYIVTDSSDDNIHDPKPGTLRHAVIQKQPLWIIFARSM
VIRLTQELIVTSHKTIDARGANVHIAHGAGITLQFVQNVIIHGLHIHDTVPGNGGMIRDS
VDHIGIRTHSDGDGISIYGSSNIWLDHLSMWNCADGLIDAIQGSTAITISNSHFTRHNDV
MLFGASDGFSGDAIMQITVAFNHFGKGLIQRMPRCRWGFIHVVNNDYTHWLMYAIGGSSH
PTIISQGNRFIAPPNQAAKEVTKRDYAPESVWKSWQWRSEGDLMINGAFFVQSGVPSKNH
GFGRLDVMKARPGTYVTRLTRFAGSLNCKVGHPC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaagctcaatttggcccttcttatgatatctttctgcatgctggttccaagc
ttgaaggcagagacacaaaatgacaccctcaacattgctgagttcgactctgtatggcag
caacgagccctgaaagctcagaaggcagctctcaaggcctaccaacccaacccggaacaa
gtaaccgaggacttcaacgaaagcgttgaaatgaccatcattgaggacgaccacgacgat
gatcatgctgcgggcaacagcacagggaggcatctgttaggcaaacgttacacgggccct
tgcaaggccacaaaccctatcgaccgctgctggcggtgccaggccaactgggctgacaac
cgcaagcatctggccagctgcgtgaaaggcttcggccgcaagacacgcggaggcaagaaa
ggggcttactacatcgtcaccgactcttccgacgacaatatccatgaccctaagcccgga
accctacgtcacgccgtgatccaaaagcaacccttgtggatcatatttgcacgcagcatg
gtcatcaggctgacccaggagctcatagtaacaagccacaagacaattgacgcacgcggg
gcaaatgtgcatattgctcatggcgctgggatcacactccagttcgtgcagaacgtgatt
attcatggcctccacatccacgacactgtaccgggcaatggaggtatgatcagggactcc
gtggatcacatcgggattcgcacgcatagcgacggagatggtatctccatctacggatcg
tctaacatttggctcgaccatctttctatgtggaattgcgccgatgggctcatcgacgcc
attcaagggtccactgctataaccatatccaacagccacttcacccgtcacaacgacgtg
atgcttttcggagctagcgatgggttttctggggatgcaatcatgcagataacggttgca
tttaaccatttcggcaagggattgatacagagaatgccaagatgcagatggggatttatc
catgttgtgaacaatgactacacacattggctcatgtatgccatcggaggaagctctcac
cccacaattatcagccagggcaaccgattcatcgccccaccgaaccaggctgcaaaagaa
gtgacgaagagagactatgcaccggagagcgtatggaagagctggcaatggagatcagaa
ggagatcttatgataaacggagcattctttgttcaatctggtgtgcctagcaagaaccat
ggatttggaaggttagacgtcatgaaggcaaggccaggtacatacgtcacaaggctcaca
cgctttgcaggttctctcaactgcaaggttggccacccatgctag
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