Malus domestica (apple): 103404663
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Entry
103404663 CDS
T03194
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103404663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103404663
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103404663
mRNA degradation factors
5'-3' decay
Lsm complex
103404663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
103404663
NCBI-ProteinID:
XP_008341819
LinkDB
All DBs
Position
17:complement(join(16421158..16421235,16428125..16428187,16428274..16428389,16428479..16428547,16428966..16429026))
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AA seq
128 aa
AA seq
DB search
MSWAGPEDVYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDSEREELPPHMTRVSAAEIKRAQKAEREASDLKGTMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggcccagaagatgtctacctttccacttctctggccagctatcttgac
aagaaacttcttgtgctgctccgagatggtcgaaaacttttggggatacttcgatcgttt
gatcaattcgccaatgctgttcttgagggtgcttgtgagagagtcattgttggcgatctt
tactgtgatatccctttgggtctgtacgtaatccgtggggagaatgttgttctaatcggc
gagctggattcagagagggaggaacttccaccgcacatgactcgtgtttcagctgcagaa
attaaaagggcacagaaagcagaaagggaagcttctgatcttaaaggtacaatgagaaaa
agaatggagttccttgatatggattaa
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