Malus domestica (apple): 103405819
Help
Entry
103405819 CDS
T03194
Name
(RefSeq) THO complex subunit 4D-like
KO
K12881
THO complex subunit 4
Organism
mdm
Malus domestica (apple)
Pathway
mdm03013
Nucleocytoplasmic transport
mdm03015
mRNA surveillance pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103405819
09122 Translation
03013 Nucleocytoplasmic transport
103405819
03015 mRNA surveillance pathway
103405819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103405819
03041 Spliceosome [BR:
mdm03041
]
103405819
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103405819
TREX complex
103405819
Spliceosome [BR:
mdm03041
]
Complex C
Other components
EJC/TREX
103405819
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103405819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
103405819
NCBI-ProteinID:
XP_028953185
LinkDB
All DBs
Position
17:complement(join(32040419..32040432,32040767..32040942,32044137..32044193,32045501..32045688,32046439..32046507,32046601..32046744,32047068..32047331))
Genome browser
AA seq
303 aa
AA seq
DB search
MSTALDMSLDDMIKNSRGNRERNREQRGRGSRGRGGPRGSFNAGRMAAGRIPAGRMASGR
IPAGRMTGGVRRGPLTVNARPSSYTIAKSTRRTKRFPWQPDLFEDSLRAAGISGIEIGTK
LYVSNLDYGVTNEDIRELFSEIGELKRYAVHFDKNGRPSGSAEVVYTRRSDAFAALKRYN
NVLLDGKPMKIEIVGANAGMPISARVNVTGMHGRKKRTVVMTPGPGNAGGYAMPMVNRGP
SRSSRGGNRNGRGKPRGNGSGSGRGRGRGRGGEGRKKPVEKSVDELDKELDSYHADNMQD
PVL
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactgctttggatatgtcgcttgatgacatgattaagaacagcaggggtaaccgt
gagagaaatagagaacaacgtggtaggggttctcgtggccgtggaggaccacgtggctcc
tttaatgctggaaggatggccgccggaagaattccagctggaaggatggccagtggaaga
attccagctggaagaatgacaggaggagttcgtagaggtcctctcacggtgaatgctcgg
ccatcctcgtataccattgccaagtctacccgcagaaccaagcgtttcccatggcagcct
gatttgtttgaagacagccttagagctgcagggatatcagggattgagattggcacaaag
ttatatgtttccaacttggactatggagtgacaaatgaggatataagggaacttttctct
gagatcggagagctgaagcgatatgcagtacattttgacaaaaatggtcgcccaagtggt
tcagctgaagtggtttatactagaagaagtgatgcatttgcagcattgaagcggtataat
aatgttctattggacgggaagcctatgaagattgagattgttggtgctaatgcagggatg
cctatttcagctcgtgtgaatgtgactggcatgcatggaaggaagaaaaggactgttgta
atgacgcccggacctggtaatgctggtggctatgctatgcctatggttaatcgtggtcct
agtaggagcagtcgtggagggaacagaaatggtcgcggcaaaccgcgtgggaatggcagc
ggcagtggtcgtggacgcgggcgtggtcgtggtggagaagggaggaagaagcctgtggag
aagtcggttgatgaacttgacaaggaactcgatagctatcacgcagataacatgcaggac
ccagttttatga
DBGET
integrated database retrieval system
